Fig. 5. (A) Confirmation of the micro-array results for four selected ESTs. In a
micro-array screen of 1700 ESTs, using RNAs from growing Dd-STATb+ and
Dd-STATb-cells to make the labelled cDNAs, 38 ESTs showed a reproducible
difference in hybridisation (see Table
1). Several of the characterised ESTs (i.e. those where the
Dictyostelium gene had previously been described or, in the case of
HGPRT, where a function could be inferred) were employed as probes in northern
transfer, using RNAs extracted from cells growing in HL5 medium and at the
indicated densities. In some cases, different northern blots were used for
different analyses. A loading control was performed for each blot, using the
constitutively expressed gene Ig7, and in each case the control confirmed the
changes visualised here (data not shown). (B) Comparison of the levels of
discoidin 1 gene expression in multiple Dd-STAb+ and Dd-STATb-clone.
Independent clones from the same transformation, using the Dd-STATb disruption
construct, were screened for Dd-STATb expression by immunostaining. Five
`random integrant' clones (clones B12-16), where the blasticidin resistance
cassette inserted non-homologously into the genome, and five Dd-STATb
disruptant clones (B5, B6, B8, B9 and B10) were analysed by northern transfer
using a discoidin 1 probe. The loading control shown was performed on the same
blot, by melting off the discoidin 1 hybridisation signals and then using, as
a probe, the constitutively expressed gene Ig7.