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Fig. 3. Immunoprecipitation of PRE fragments. (A) Map of the bxd PRE with subfragments produced by HinfI (Hf), AvaII (Av), BglI (Bg), PstI (P) and StyI (St) and their sizes in bp. GAGA and PHO binding sites are indicated by G and P. Immunoprecipitation of a fragment with anti-PC or anti-TRX is indicated by +, no precipitation by . (B) LexA binding assays. Anti-PC immunoprecipitates the LexA probe from nuclear extracts containing LexA-PC but anti-TRX does not, showing that LexA-PC does not recruit TRX. A control fragment present in the binding reaction is indicated by *. Lanes : , no antibody; pc, anti-PC; trx, anti-TRX. The immunoprecipitated fragments were analysed on an acrylamide gel together with an aliquot of the input mixture (i). (C) The BP subfragment (left) is precipitated by anti-PC, anti-TRX and anti-PHO but TRX binding is lost in the presence of GAGAG oligonucleotide competitor (ga). Mutation of all GAGAG sequences in this fragment (BPmut) impairs the binding of both proteins (right) while PHO still binds the mutated fragment. A diagram of BP and BPmut is shown above each panel. (D) Co-precipitation of GAGA and TRX. Nuclear extracts were immunoprecipitated with no antibody (mock IP) or with anti-TRX ( trx IP). Western blots of the IPs were probed with anti-GAGA or anti-TRX. The arrowhead indicates the IgGs in the immunoprecipitate.
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