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Fig. 1. Generation of floxed and d allele of the Ppr locus. (A) Schematic representation of the Ppr locus, the targeting vector used for floxed allele generation and the floxed (fl) locus. Exons and selectable genes are indicated by gray and white boxes, respectively. loxP sequences are indicated by open triangles. Neo and tk cassettes are indicated as Neo and TK, respectively. Restriction enzyme sites for BamHI, KpnI, HindIII, RsrII, XhoI and XbaI are indicated as B, K, H, Rs, X and Xb, respectively. Probes used for Southern blot analysis are indicated with bold lines above the corresponding sequences. (B) In situ hybridization of PPR in 3-week-old mouse growth plates. (C) Northern blot analysis of PPR mRNA expression in the kidney of 8-week-old mice. (D-K) Southern blot analysis for the characterization of the Ppr d allele. DNA (10 µg) purified from wild type (+/+), homozygous floxed (fl/fl) and homozygous damaged (d/d) mice was digested with indicated restriction enzymes and hybridized with the probes indicated. Probes A and B are external probes in the 5'- and 3'-flanking regions of the targeted sequence, respectively. Probes C and S are exonic sequences for exon E3 and exon S of the Ppr gene, respectively. Probes Neo and TK are specific to the neo and the tk genes, respectively. (D) Only a single 8.5 kb band produced by the homologous recombination at the 5'-end of the targeting vector is seen in both (fl/fl) and (d/d). Note the band intensity of (d/d) is greater than that of (fl/fl), suggesting amplification of the 5'-flanking region. (E) Homologous recombination at the 3'-end was confirmed by an external probe B. Because the band intensities of the (d/d) and (fl/fl) are similar, we conclude that the 3'-flanking region is not amplified. The band in +/+ is not visualized probably because of the large size of the fragment (>18 kb). (F) An extra band for at 6.5 kb is present in d/d, in addition to the expected 8 kb band also seen in (fl/fl). (G) A band for tk is present only in d/d. (H) The band intensity for exon E3 is the same among in +/+, fl/fl and d/d. (I) The band intensity for S exon is about three times as intense in d/d as in +/+ or fl/fl. (J) Hybridization with Neo probe after RsrII digestion visualized two bands at 20 kb and 25 kb only in d/d. These may represent tandemly repeated sequences because one of the RsrII bands detected by Neo probe was also detected by probe D, corresponding to the broken bracket marked with # in L (data not shown). Neither of these bands was detected by TK probe (data not shown). (K) Each blot shown above was reprobed with the GAPDH probe for normalization. A representative blot is shown. (L) A possible structural model for the d allele of the Ppr locus. The d allele is likely to contain three copies of the targeting vector. Targeting vectors are integrated into the genome replacing the endogenous sequence of the corresponding region. One copy of tk sequence is present. A part of the 5'-flanking sequence including exon S is amplified with the targeting vector. Rs*, unmapped RsrII sites. Broken brackets, possible DNA fragments visualized in H. #, the probable fragment that hybridized with both Neo and D probes in H.
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