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First published online 14 July 2004
doi: 10.1242/dev.01260


Development 131, 3859-3870 (2004)
Published by The Company of Biologists 2004


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Coordinated regulation of gene expression by Brn3a in developing sensory ganglia

S. Raisa Eng, Jason Lanier, Natalia Fedtsova and Eric E. Turner*

Department of Psychiatry, University of California, San Diego, and the VA San Diego Healthcare System, La Jolla, CA 92093-0603, USA



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Fig. 1. Expression array analysis of E13.5 trigeminal ganglia. (A) A two-dimensional plot of the hybridization signal for ~4,000 present transcripts, including ESTs, in one of the two experiments comparing Brn3a heterozygous and knockout trigeminal ganglia. Values for the expression of the majority of transcripts fall along the central diagonal line representing equal expression in the two genotypes. A few transcripts fall outside the parallel lines indicating a greater than twofold change in expression, and examples of some highly changed transcripts are indicated. (B) To determine whether Brn3a heterozygosity results in intermediate levels of target gene expression, two-way comparisons were made between transcript levels in knockout versus wild-type, knockout versus heterozygous and wild-type versus heterozygous ganglia for the 41 increased and 62 decreased transcripts from the U74Av2 array, Experiment 1. Expression levels in wild type and heterozygotes showed a similar mean fold increase or decrease when compared to those in the knockout. However, comparison of expression levels in heterozygotes with those in wild type revealed no significant difference (fold change ~1, red horizontal line) for either the increased or decreased transcripts. As expected, the fold change was also approximately 1 for two-way comparisons between the genotypes for a group of 160 unchanged neural transcripts (0.003<change-p<0.997; see Supplemental Data, http://dev.biologists.org/supplemental/).

 


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Fig. 2. Brn3a regulates sensory neurotransmitter systems. The cranial sensory ganglia of control (Brn3a+/+) and knockout (Brn3a–/–) E13.5 embryos were examined for the expression of components of neurotransmitter systems. (A) The plane of section used in subsequent views is illustrated using an E13.5 embryo stained for the expression of ß-galactosidase regulated by a Brn3a sensory enhancer (Eng et al., 2001Go). (B) In situ hybridization showing the expression of the Brn3a mRNA in the cranial sensory ganglia. (C) In situ hybridization for the 5HT3 receptor, increased in the microarray analysis of Brn3a knockout mice, and the mediator of G-protein signaling RGS10, decreased in the microarray. (D-F) Immunohistochemistry for the products of Brn3a target genes in the trigeminal ganglia of E13.5 embryos. (D) Galanin immunoreactivity in the trigeminal ganglion co-localized with Brn3a in a majority of trigeminal neurons. (E) Tyrosine hydroxylase was expressed in a more limited subset of trigeminal neurons, most of which also expresses Brn3a. (F) A comparison of trigeminal ganglia from control mice and Brn3a knockouts, showing that, as predicted from the microarray studies, calretinin (Calret) and somatostatin (Som) immunoreactivity is markedly increased in the absence of Brn3a, whilst galanin is reduced to below the threshold of detection, and tyrosine hydroxylase (TH) is also significantly decreased. 5g, trigeminal ganglion; 8g, vestibulocochlear ganglion; 9g, IX/X ganglion complex; di, diencephalon; drg, dorsal root ganglion; hb, hindbrain; ot, otic region; tel, telencephalon; sc, spinal cord. Scale bars: B, 400 µm, D,E, 25 µm; F, 200 µm.

 


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Fig. 3. Coordinated regulation of transcription factor expression in sensory ganglia by Brn3a. (A) In situ hybridization analysis of E13.5 embryos for expression of the transcription factors GATA3, Irx1, Irx2, MyoR, Ap2ß and Math3, all of which exhibited increased expression in the microarray analysis in Brn3a knockout ganglia. (B) Expression of mRNA for the decreased transcription factors HoxD1 and Runx1. In addition to the cranial sensory ganglia, each of these factors also exhibited previously known patterns of expression in the CNS, and in the case of MyoR, in developing cranial musculature. The plane of section used in all views is shown in Fig. 2A. 5g, trigeminal ganglion; 8g, vestibulocochlear ganglion; 9g, IX/X ganglion complex; di, diencephalon; hb, hindbrain; m, differentiating occipital musculature; ot, otic region; tel, telencephalon; sc, spinal cord.

 


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Fig. 4. Cellular expression of Brn3a target genes in the CNS. The brain and retina of E13.5 embryos were examined for alterations in Brn3a target genes identified in the trigeminal ganglion. (A) Calretinin and Brn3a characterize distinct populations of developing neurons in the E13.5 developing thalamus, midbrain, and hindbrain, shown in sagittal section, and are not co-expressed (inset). The diagonal line indicates the plane of section used in the midbrain views (B,C,G,H,L). (B) Control midbrain, showing distinct expression of Brn3a and calretinin. (C) Unchanged expression of calretinin in the Brn3a knockout midbrain. (D,E) Control retina, showing calretinin and Brn3a expression in overlapping populations of neurons. (F) Brn3a knockout retina showing no apparent increase in calretinin immunoreactivity. (G,H) Distinct patterns of somatostatin and Brn3a immunoreactivity in the midbrain, which are not changed in the Brn3a knockout. (I,J) Retinal expression of somatostatin, probably co-localized with Brn3a in a subset of ganglion cells, although the axonal distribution of somatostatin immunoreactivity makes precise cellular co-localization difficult to ascertain. (K) Retinal expression of somatostatin also appears unaltered in the absence of Brn3a. (L,M) Tyrosine hydroxylase and Brn3a identify entirely distinct populations of developing neurons in the ventral tegmental area (VTA) and the tegmentum (nuclei stained red), respectively. Scale bars: A, 400 µm; B,D,G, 100 µm; I, 100 µm; L, 200 µm; M, 50 µm.

 

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© The Company of Biologists Ltd 2004