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Fig. 1. Generation and verification of a targeted debcl mutation.
(A) Targeting scheme for the debcl gene. The donor construct
was generated by insertional cloning of a 4 kb upstream and a 2.7 kb
downstream genomic sequence of the debcl gene into the targeting
vector pW25. Upon chromosomal targeting, the debcl native gene is
replaced with a white+ marker gene. (B)
Verification of the debcl-targeting event by PCR, Southern blot and
RT-PCR analysis. Primer pair A and B were used to amplify both the native and
the knock-out locus to confirm the replacement of debcl (4.2 kb) with
the white+ marker gene ( 5.2 kb). Primer pair C and D were used
to verify the right arm of recombination during the screening process for
potential recombinants. Primer pair E and F were used to confirm targeted
recombination of the left arm of recombination (data not shown). WT refers to
the yw parental strain, wild type at the debcl locus on the
second chromosome; Donor refers to the debcl donor construct on the
third chromosome, wild-type at the debcl native locus on the second
chromosome; debcl6,22,23,27,59,61 represent different
debcl knock-out candidates disrupted at the native locus.
debcl6 was a potential debcl targeted deletion,
but failed the PCR screen and was therefore eliminated from further
characterization analysis. An additional debcl disruption allele,
debcl47/48, was also confirmed (not shown). Southern blot
analysis using genomic DNA from the indicated fly strains was used to confirm
both the right (SBP1) and left (SBP2) arm of recombination. For SBP1
(BglII digest) and SBP2 (SacI digest), the black arrowheads
indicate the expected 6.4 kb and 8.3 kb genomic fragments in the WT and donor
strains for SBP1 and SBP2, respectively. The white arrowheads indicate
aberrant genomic fragments of 9.6 kb and 5.8 kb, indicative of gene-targeted
replacement, for SBP1 and SBP2, respectively. RNA from L3 larvae was used as a
template to confirm abolishment of the debcl transcript in
debclKO flies, and to confirm that transcript levels are
unaffected in the neighboring genes fmo-2, CG30443 and geminin.
rp49 was used as a control for RT-PCR. The white asterisk indicates the
absence of the debcl transcript in mutant flies. (C)
Photograph of extra scutellar bristles in debclKO flies
(white arrow).
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