First published online 25 August 2004
doi: 10.1242/dev.01344
Development 131, 4709-4723 (2004)
Published by The Company of Biologists 2004
SMAD-mediated modulation of YY1 activity regulates the BMP response and cardiac-specific expression of a GATA4/5/6-dependent chick Nkx2.5 enhancer
Kyu-Ho Lee1,2,
Samuel Evans1,
Todd Y. Ruan and
Andrew B. Lassar1,*
1 Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical
School, 240 Longwood Avenue Boston, MA 02115, USA
2 Cardiology Department, Children's Hospital Boston, 300 Longwood Avenue,
Boston, MA 02115, USA
*
Author for correspondence (e-mail:
andrew_lassar{at}hms.harvard.edu)
Accepted 8 July 2004
 |
SUMMARY
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Prior work has indicated that BMP signals act in concert with FGF8, WNT11
and WNT antagonists to induce the formation of cardiac tissue in the
vertebrate embryo. In an effort to understand how these signaling pathways
control the expression of key cardiac regulators, we have characterized the
cis-regulatory elements of the chick tinman homolog chick
Nkx2.5. We find that at least three distinct cardiac activating
regions (CARs) of chick Nkx2.5 cooperate to regulate early expression
in the cardiac crescent and later segmental expression in the developing
heart. In this report, we focus our attention on a 3' BMP-responsive
enhancer, termed CAR3, which directs robust cardiac transgene expression. By
systematic mutagenesis and gel shift analysis of this enhancer, we demonstrate
that GATA4/5/6, YY1 and SMAD1/4 are all necessary for BMP-mediated induction
and heart-specific expression of CAR3. Adjacent YY1 and SMAD-binding sites
within CAR3 constitute a minimal BMP response element, and interaction of
SMAD1/4 with the N terminus of YY1 is required for BMP-mediated induction of
CAR3. Our data suggest that BMP-mediated activation of this regulatory region
reflects both the induction of GATA genes by BMP signals, as well as
modulation of the transcriptional activity of YY1 by direct interaction of
this transcription factor with BMP-activated SMADs.
Key words: Nkx2.5, BMP, YY1, GATA, SMADs, Cardiogenesis, Chick
 |
Introduction
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The heart is the first organ to develop during vertebrate embryogenesis and
arises from cardiac progenitor cells that migrate into the anterior lateral
mesoderm during gastrulation (DeHaan,
1965
; Rawles,
1943
; Rosenquist,
1966
; Rosenquist and DeHaan,
1966
). The tissues and signals that induce the specification of
cardiac progenitors have been the subject of intense investigation. Signals
from the anterior endoderm in both chick and amphibian embryos
(Jacobson and Duncan, 1968
;
Sater and Jacobson, 1989
;
Schneider and Mercola, 2001
;
Schultheiss et al., 1995
), and
from the organizer region in Xenopus embryos
(Schneider and Mercola, 2001
)
have been shown to promote the formation of cardiac tissue. Signals that
promote the induction of cardiac mesoderm include BMP family members
(Andree et al., 1998
;
Schlange et al., 2000
;
Schultheiss et al., 1997
;
Schultheiss and Lassar, 1997
;
Shi et al., 2000
); FGF8
(Alsan and Schultheiss, 2002
;
Reifers et al., 2000
); WNT11
(Eisenberg and Eisenberg,
1999
; Pandur et al.,
2002
); and Crescent, FrzB and Dikkopf
(Marvin et al., 2001
;
Schneider and Mercola, 2001
;
Tzahor and Lassar, 2001
),
which act as antagonists of Wnt family members that are expressed in either
nascent mesoderm of the primitive streak or in the neural tube at
post-neurulation stages (Tzahor and
Lassar, 2001
).
One of the earliest genes to be induced in cardiac precursor cells in
response to these various heart-inducing signals is the transcription factor
Nkx2.5. Nkx2.5 is a homolog of the Drosophila tinman gene,
and is first expressed in the anterior lateral regions of gastrula stage
vertebrate embryos termed the `cardiac crescent', which contains both cardiac
and foregut mesendoderm precursors. At later stages of development,
Nkx2.5 is expressed throughout the mature heart and in the pharyngeal
arches, spleen, thyroid, stomach and tongue
(Komuro and Izumo, 1993
;
Lints et al., 1993
).
Nkx2.5 works in concert with other transcription factors to regulate
early cardiac gene expression (Chen et
al., 1996
; Chen and Schwartz,
1996
; Sepulveda et al.,
1998
; Sepulveda et al.,
2002
). Given the role of Nkx2.5 in heart induction and
development, identification of the regulatory sequences and transcription
factors controlling the expression of this gene is of particular interest.
Several activating regions (ARs) that flank the mouse Nkx2.5 gene
have been described that are capable of driving transgene expression in both
the cardiac crescent and newly formed heart
(Lien et al., 1999
;
Reecy et al., 1999
;
Schwartz and Olson, 1999
;
Searcy et al., 1998
;
Tanaka et al., 1999
).
Consistent with the finding that BMP signals promote Nkx2.5
expression and cardiac induction (Schlange
et al., 2000
; Schultheiss et
al., 1997
), several consensus binding sites for SMAD4-containing
complexes have been functionally implicated in driving expression of the
murine Nkx2.5 AR2 cardiac crescent enhancer
(Liberatore et al., 2002
;
Lien et al., 2002
). In
addition, consensus binding sites for the GATA zinc-finger transcription
factors have been found to be necessary for the activity of both AR1 and AR2,
and probably interact with GATA4, GATA5 or GATA6
(Lien et al., 1999
;
Searcy et al., 1998
).
In this study, we have characterized genomic flanking regions of the chick
Nkx2.5 gene to identify three distinct cis-regulatory elements or
cardiac activating regions (CAR 1, 2 and 3) that work in combination to drive
transgene expression in both the cardiac crescent and in segment-specific
compartments of the maturing heart. One enhancer, located 3' to the
coding exons of chick Nkx2.5 (CAR3), confers BMP responsiveness to
reporter genes in a heterologous assay system, and drives transgene expression
in both the primary and secondary heart fields and throughout the outflow
tract and right ventricle of the maturing heart. By a combination of deletion
mapping and embryonic gel shift analysis, we have identified a 200 bp sequence
capable of both conferring a BMP response and driving cardiac-specific
transgene expression. This regulatory sequence contains a triad of
functionally important binding sites for GATA4/GATA5/GATA6 and YY1 that act in
conjunction with three closely associated SMAD-binding sites to regulate
transgene expression in vivo and confer BMP responsiveness to CAR3 driven
reporters in vitro. Detailed molecular analysis of this BMP response element
(BMPRE) suggests that the transcriptional repressor, YY1, serves a primary
role in both recruiting an activated SMAD complex to the BMPRE and becomes a
transcriptional activator when bound adjacent to BMP-activated SMADs. These
findings indicate that the combinatorial activity of both spatially restricted
transcription factors such as GATA proteins work in concert with a more
ubiquitously expressed transcription factor (i.e. YY1), the activity of which
is modulated by SMAD association to drive a regionalized BMP response.
 |
Materials and methods
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Vectors and plasmids
Details regarding generation Nkx2.5-lacZ and luciferase constructs
are available upon request. pCS2 MT-SMAD1 and pCS2 MT/Flag SMAD4 were a kind
gift from M. Whitman. pGEX constructs for producing GST fusion proteins of
SMAD MH1 domain proteins were a kind gift from M. Whitman and C. Yeo. pcDNA
rat GATA4 was derived from pCG-GATA4, a kind gift of M. Nemer. pCS2 chick
GATA5 was a kind gift from T. Schultheiss (unpublished). pcDNA mouse GATA6 was
a kind gift from T. Collins. Flag-tagged YY1 full-length and deletion
expression constructs were kind gifts from E. Seto
(Yao et al., 2001
), G. Sui and
Y. Shi (unpublished). PCMV-p21E1b was a kind gift from O. Kranenburg
(Kranenburg et al., 1995
).
Transient and stable transgenic mouse assays
Nkx2.5-lacZ reporter constructs were introduced into a one-cell
stage FVB mouse embryo using standard methods. In the case of the
Nkx2.5-lacZ-BMPRE construct (Fig.
1R,S) an insulator sequence derived from the chick ß-globin
locus (Chung et al., 1993
) was
appended immediately 3' to the reporter construct. F0 embryos were
collected at 7.5-10.5 days post-injection following maternal sacrifice, and
fixed and stained for ß-galactosidase activity according to previously
described methods (Zimmerman et al.,
1994
). Transgenic status of individual embryos was determined by
PCR for the lacZ transgene from DNA derived from yolk sacs and embryo
fragments (Wassarman, 1993
).
Stable lines were obtained by mating fully grown F0 to wild-type FVB mice.

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Fig. 1. BMP response and in vivo transgene expression maps to CAR3 enhancer. (A)
Genomic flanking regions of chick Nkx2.5 containing CAR enhancers as
shown were assayed for BMP response in P19 cells in the context of both
hsp68-lacZ and Nkx2.5-luciferase reporters (Nkx2.5-lux). Only the
CAR3 enhancer is BMP responsive. (B) Deletion mapping of BMP response and
transgenic expression for 3 kb 3' genomic flanking region of chick
Nkx2.5which contains CAR3, using hsp68-lacZ
promoter/reporter. Nucleotide positions of 5' and 3' ends of
deleted flanking regions are given relative to transcriptional start site of
chick Nkx2.5. Extent of the genomic fragments yielding positive
reporter lacZ expression in F0 transient transgenic mouse embryos are
shown by black bars (C3-2, C3-4, C3-6, C3-8 and C3-10); negative reciprocal
fragments are represented as gray bars (C3-1, C3-3, C3-5, C3-7 and C3-9). BMP
response of these hsp-lacZ-CAR3 reporters is shown to immediate right
of their representations, expressed as normalized fold induction by BMP. (C-L)
Representative X-gal stained E7.5 F0 transient transgenic mice embryos
injected with C3 reporters C3-1 to C3-10. (M) BMP response of 2 kb CAR3
(fragment C3-2) and 200 bp BMPRE (fragment C3-10) enhancers linked to
Nkx2.5-lux reporters (Nkx2.5-lux-CAR3 and Nkx2.5-lux-BMPRE, respectively).
Extents of CAR3 and BMPRE enhancers and nucleotide positions relative to
transcriptional start site are shown as above. BMP response in P19 cell assay
is shown to right as fold induction above basal. (N-S) Representative X-gal
stained F0 transient transgenic mice embryos injected with
Nkx2.5-lacZ-CAR3 (N-Q) and Nkx-lacZ-BMPRE (R,S). Embryonic
stages are shown at bottom left of pictures. Frequency of transient or stable
(C3-2) transgene expression in cardiac region (cardiac crescent): C3-1, 0/20
embryos; C3-2, 2/3 lines; C3-3, 0/18 embryos; C3-4, 4/5 embryos; C3-5, 1/19
embryos; C3-6, 1/1 embryos; C3-7, 1/12 embryos; C3-8, 12/12 embryos; C3-9, 0/5
embryos; C3-10, 12/16 embryos. CC, cardiac crescent; LS, lateral somite; OFT,
outflow tract; AL, allantois; BA, branchial arches; St, stomach; RV, right
ventricle; H, heart; LV, left ventricle.
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BMP response assays
BMP response assays were performed as previously described
(Chen et al., 1998
). Cells
were transfected with 0.1 µg luciferase or lacZ reporters, along
with 20 ng TK-renilla luciferase (Promega) and the indicated quantities of
expression vectors as per individual experiments. Individual wells were
assayed after 18-24 hours of incubation with or without the addition of 50
ng/ml recombinant human BMP2 (a kind gift from Genetics Institute/Wyeth
Pharmaceuticals) or conditioned medium from 293 cells programmed to
overexpress mouse BMP4 (D.-W. Kim and A.B.L., unpublished) using either a dual
luciferase assay system (Promega) or a chemiluminescent ß-galactosidase
assay (Galactolight; Tropix). Nkx2.5-driven luciferase activity was normalized
to that of TK-renilla luciferase. All transfections are representative of
three to five independent experiments with similar results.
Chick embryo extracts and gel shift assays
Anterior lateral plate, posterior primitive streak and heart explants were
dissected from staged chick embryos. Explants from 50-100 embryos were pooled
on ice in PBS, collected by mild centrifugation in a microfuge at 110
g, then resuspended and homogenized in an extraction buffer
containing 20 mM HEPES (pH 7.6), 20% glycerol, 500 mM NaCl, 1.5 mM
MgCl2, 0.2 mM EDTA, 0.1% Triton X-100, protease inhibitors
(`C/Emplete, EDTA-free' protease inhibitor cocktail from Roche), 2 mM
Na4P2O7, 1 mM NaVO3, 10 mM NaF and
2.5 ng/ml calyculin B. Cellular debris was removed by centrifugation at 10,000
g for 10 minutes at 4°C. Shifts were performed with 1-2
µg total protein from the various extracts in 20 mM HEPES (pH 7.6), 100 mM
NaCl, 1 mM MgCl2, 10% glycerol and 0.5 µg dI/dC (Pharmacia),
resolved on 5% acrylamide/0.25x TBE at 4°C and autoradiographed. Gel
shifts were also performed using nuclear extracts prepared as above from COS-7
cells programmed to express either recombinant rat GATA4, chick GATA5, mouse
GATA6 or flag-tagged full-length and deletion mutants of human YY1. GST-SMAD1
and SMAD4 MH1 domain fusion proteins and control GST proteins were produced in
and purified from E. coli BL21 bacterial cells according to
manufacturer's instructions (Amersham). Gel shifts were performed as with
chick embryo extracts, using 250 ng purified proteins and 1 µg dA/dT
(Pharmacia). Supershifts were performed with the addition of 200 ng of control
Ig, or rabbit polyclonal anti-mouse GATA4 and GATA6 (Santa Cruz
Biotechnologies).
Co-immunoprecipitation and western blot analyses
For co-immunoprecipitation experiments, 5 µg of the indicated expression
plasmids were used per 100 mm plate. pCS2 empty vector was used to adjust
total DNA amounts where necessary. Total cell extracts were prepared in Co-IP
buffer containing 50 mM Tris (pH 7.8), 150 mM NaCl, 1 mM EDTA, 5 mM NaF, 1 mM
Na3VO4, 1 mM Na4P2O7,
1.5 mM MgCl2, 1 mM DTT, 10% glycerol, 0.5% NP-40 and various
protease inhibitors (`Complete, EDTA-free' protease inhibitor cocktail from
Roche). The extracts were then centrifuged for 10 minutes at 10,000
g at 4°C and the supernatants were used for
immunoprecipitation assays as previously described
(Kim and Cochran, 2000
).
Anti-Myc rabbit polyclonal antibody and anti-Myc monoclonal (9E10) antibody
were obtained from Upstate Biotechnology. Anti-YY1 polyclonal and monoclonal
antibodies were obtained from Santa Cruz Biotechnology. Protein G-sepharose
was obtained from Sigma.
 |
Results
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Transgenic analysis with a heterologous promoter reveals three cardiac activating regions flanking the chick Nkx2.5 gene
As the expression patterns of chick and mouse Nkx2.5 appear highly
conserved through embryonic development
(Lints et al., 1993
;
Schultheiss et al., 1995
), we
investigated whether sequences flanking the chick gene were capable of driving
cardiac-specific transgene expression in mouse embryos. Transient expression
of the hsp68-lacZ reporter
(Kothary et al., 1989
) linked
to three non-overlapping regions of the chick Nkx2.5 gene drove
cardiac-specific gene expression in transgenic mice (see Fig. S1C in the
supplementary material). We termed these various regions of the chick
Nkx2.5 gene, cardiac activating regions (CARs) 1, 2 and 3. In an
effort to better define their distinct roles, we performed further transgenic
analysis of the various CARs in combination with the native Nkx2.5
promoter. When fused to the minimal promoter for the Nkx2.5 gene (see
Fig. S2B in the supplementary material), the various above-described CARs
drove several distinct patterns of cardiac-specific transgene expression in
developing mouse embryos (see Fig. S2C-O in the supplementary material). CAR2,
when appended to the Nkx2.5-lacZ reporter (see Fig. S2B in the
supplementary material) drives transgene expression in the posterior regions
of the early cardiac crescent at E7.5 (see Fig. S2C in the supplementary
material) and in the outflow tract at later looping heart stages (E10.5) (see
Fig. S2D,E in the supplementary material) (data not shown). CAR3, when
positioned downstream of the minimal Nkx2.5 promoter (as it is
located in this position relative to the endogenous promoter in the native
chick Nkx2.5 gene), drives transgene expression in the anterior
cardiac crescent at E7.5 (see Fig. S2F in the supplementary material) and in
the mesoendoderm in the pharyngeal region adjacent to the outflow tract at
E8.5 (see Fig. S2G in the supplementary material), in a pattern that is very
reminiscent of the Isl1-positive progenitors of the secondary heart field
(Cai et al., 2003
). By E10.5,
robust Nkx2.5-lacZ-CAR3 transgene expression was observed in the
branchial arches and extended through the outflow tract and right ventricle up
to the interventricular septum (see Fig. S2H in the supplementary material). Although CAR1 failed to drive transgene expression in the early cardiac
crescent when linked to either the hsp68 or the minimal Nkx2.5
promoter (data not shown), the combination of CAR1, CAR2 and CAR3 (see Fig.
S2B in the supplementary material) drove exceptionally robust levels of
lacZ expression in the branchial arch region and in the myocytes of
the outflow tract, and both right and left ventricles at E10.5 (see Fig. S2M-O
in the supplementary material).
CAR3 contains a BMP response element capable of driving transgene expression in the cardiac crescent, the branchial arches, the outflow tract and the right ventricle
Prior work by ourselves (Schultheiss et
al., 1997
) and others (Andree
et al., 1998
; Schlange et al.,
2000
) has indicated that BMP family members are necessary for
inducing cardiac mesoderm and Nkx2.5 gene expression in early chick
embryos. We therefore tested the CARs flanking the chick Nkx2.5 gene
for responsiveness to BMP signaling by employing P19 embryonal carcinoma
cells, which are known to be responsive to BMP signals
(Chen et al., 1998
;
Hata et al., 2000
).
Administration of BMP2 or BMP4 (50 ng/ml) to transfected P19 cells induced the
expression of reporter constructs containing CAR3 appended to either the hsp68
promoter or the minimal Nkx2.5 promoter three- to fourfold relative
to a co-transfected CMV-renilla luciferase control plasmid
(Fig. 1A,B,M). By contrast,
constructs containing these same promoters driven by either CAR1 or CAR2
failed to show any BMP response in transfected P19 cells
(Fig. 1A). By sequential
deletion analysis of the 2 kb CAR3 sequence, we were able to localize a 200 bp
BMP response element (BMPRE) to nucleotides +2150-2350 in CAR3
(Fig. 1B). Interestingly,
reporters driven by the 200 bp BMPRE displayed a greater response to BMP
signals than did reporters driven by the original 2 kb fragment containing
CAR3, suggesting that sequences outside the 200 bp BMPRE attenuate the BMP
responsiveness of CAR3 in P19 cells. Transgenic analysis revealed that only
reporter transgenes containing the 200 bp BMPRE from CAR3 were capable of
driving lacZ expression in the cardiac crescent, branchial arches and
outflow tract/right ventricle of the developing heart
(Fig. 1C-L; data not shown).
When appended to the endogenous chick Nkx2.5 promoter, we found that
either the 2 kb fragment containing CAR3 or the 200 bp subfragment containing
the BMPRE drove BMP-responsive luciferase reporter expression in transfected
P19 cells (Fig. 1M) and
tissue-restricted lacZ expression in the branchial arches, outflow
tract and right ventricle in transgenic mice
(Fig. 1N-S).
SMAD binding elements are necessary for BMP induced activity of a CAR3 BMPRE-driven reporter in vitro and for CAR3-driven cardiac-specific transgene expression in vivo
Because SMADs are known to transduce BMP signals into the nucleus by both
recognizing SMAD binding elements (SBEs) and associating with specific
transcription factors, we evaluated whether SMAD1/4 would interact with
sequences within the CAR3 BMPRE. The MH1 domain of SMAD proteins is known to
bind weakly to the sequence GTCT/AGAC
(Attisano and Wrana, 2000
;
Massague and Chen, 2000
;
Zawel et al., 1998
). We found
three such putative SMAD-binding elements (SBE1-3; boxed in green in
Fig. 2A) located within the 200
bp BMPRE of CAR3. We found that the DNA-binding MH1 domain of SMAD4 could bind
to oligomers containing either of these potential SBEs in vitro
(Fig. 2B, lanes 3, 9 and 15),
and that disruption of the GTCT/AGAC consensus binding sequence at each of
these sites significantly diminished this interaction
(Fig. 2B, lanes 6, 12 and
18).

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Fig. 2. SMAD consensus sites bind MH1 domain of SMAD4 and are required for BMP
response of CAR3. (A) Oligonucleotides used for SMAD protein gel shifts are
shown as colored horizontal lines over a sequence of 200 bp BMPRE,
representing chick Nkx2.5 genomic sequences from +2150 to +2350.
Nucleotide positions in BMPRE are renumbered from 1-200 for convenience.
Consensus SMAD-binding sites or SBEs are shown boxed in green; numerical
designations are shown in green circles. Nucleotide substitutions made for
mutant oligos and reporters are displayed in red under their cognate sites, as
are correspondingly altered sequences within the BMPRE (SBE1, nucleotides
35-65; SBE2, nucleotides 80-120; SBE3, nucleotides 120-160). (B) Gel shifts
performed with purified GST, GST-SMAD1 MH1 or GST-SMAD4 MH1 domain proteins on
labeled wild-type (lanes 1-3, 7-9 and 13-15, respectively) or mutant (mut,
lanes 4-6, 10-12 and 16-18, respectively) SBE oligomers. (C) P19 cell BMP
response assays for wild-type Nkx2.5-lux-CAR3 (left) or Nkx2.5-lux-BMPRE
(right) reporters, or cognate reporters bearing specific SBE mutations shown
in A. Nkx2.5-lux constructs are shown schematically over bar graph. (D-O)
Representative X-gal stained F0 transient transgenic mice embryos injected
with wild-type or SBE mutant (mut) Nkx2.5-lacZ-CAR3 reporters.
Embryonic stages are in the bottom left-hand corners. Whole-mount embryo at
stages E7.5 (D,G,J,M) and E10.5 (E,H,K,N) and E10.5 hearts (F,I,L,O) are shown
as designated for Nkx2.5-lacZ-CAR3 WT (D-F), mut SBE1 (G-I), mut SBE2
(J-L) and mut SBE3 (M-O) as shown in A. Cardiac staining shown was
representative of the following numbers of transient transgenic embryos
bearing Nkx2.5-lacZ constructs driven by CAR3 reporters: wild type,
3/5 E7.5 and 4/4 E10.5 embryos displayed expression in the cardiac crescent
and forming heart; CAR3mut SBE1, 2/4 E7.5 embryos displayed robust transgene
expression in the cardiac crescent and 9/9 E10.5 embryos either failed to
express the transgene or displayed very weak transgene expression in the
outflow tract; CAR3mut SBE2, 7/7 E7.5 embryos displayed robust transgene
expression in the cardiac crescent and 2/2 E10.5 embryos failed to express the
transgene; CAR3mut SBE3, 7/7 E7.5 embryos and 3/3 E10.5 embryos either failed
to express the transgene or displayed residual transgene expression in the
outflow tract. Abbreviations are as in previous figures. RA, right atrium; LA,
left atrium; LV, left ventricle.
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We investigated whether these SBEs were necessary for either the BMP
responsiveness of a CAR3-driven reporter or cardiac-specific expression of a
CAR3-driven transgene. Mutation of either SBE1, SBE2 or SBE3 abrogated the BMP
responsiveness of the Nkx2.5-lux-CAR3 construct in transfected P19 cells
(Fig. 2C, left panel).
Interestingly, the BMP responsiveness of a reporter driven by only the 200 bp
CAR3 BMPRE (Nkx2.5-lux-BMPRE) required SBE3, but neither SBE1 nor SBE2
(Fig. 2C, right panel),
suggesting that sequences flanking the 200 bp BMPRE impose the requirement for
these additional SMAD binding elements. Although mutation of SBE1, SBE2 or
SBE3 significantly reduced or eliminated CAR3-driven transgene expression in
day 10.5 hearts (Fig.
2H,I,K,L,N,O), mutation of only SBE3, but not SBE1 or SBE2,
reduced expression of this reporter in the cardiac crescent of day 7.5 embryos
(Fig. 2G,J,M). Indeed, mutation
of SBE1 and SBE2 potentiated transgene expression in the cardiac crescent of
day 7.5 embryos (Fig. 2G,J). In
summary, all three SBEs present in the CAR3 BMPRE seem to be required for both
BMP induction and high level expression of a CAR3-driven transgene in the day
10.5 heart; however, SBE1 and SBE2 are dispensable for both CAR3-driven
transgene expression in the cardiac crescent (at day 7.5) and BMP
responsiveness of a reporter driven by the isolated CAR3 BMPRE.
Factors binding to sequences in the BMPRE are present in extracts made from the embryonic chick heart
To identify transcription factors that interact with the 200 bp CAR3 BMPRE
(shown in Fig. 3C), we employed
an electrophoretic mobility shift assay (EMSA) to determine whether factors in
whole cell extracts made from various embryonic chick tissues interact with
the BMPRE. As shown in Fig.
3A,B, endogenous Nkx2.5 is expressed in both stage 6-8 anterior
lateral plate (ALP) tissue and in hearts of day 3 (HH stage 24) chick embryos,
and is not expressed in posterior primitive streak (PPS) tissue from stage 6-8
chick embryos (Fig. 3A,B). We
systematically assayed the ability of components in extracts derived from
these dissected tissues (outlined in Fig.
3A,B) to bind to double stranded 30-40 bp oligomers representing
consecutive overlapping portions of the 200 bp BMPRE (diagrammed by numbered
lines in Fig. 3C). As shown in
Fig. 3D, we were able to detect
distinct DNA binding activities interacting with six different regions within
the BMPRE. Five of these binding activities (A1, C, C', D, E) were found
at approximately equal levels in extracts made from either stage 6-8 ALP or
PPS (Fig. 3D, lanes 1, 2, 9,
10, 13, 14, 15, 16, 19 and 20). By contrast, activity A2, although present to
some degree in ALP extracts, was relatively enriched in PPS extracts
(Fig. 3, lanes 1 and 2).
Conversely, activity B was relatively enriched in ALP extracts
(Fig. 3D, lanes 5, 6, 7, and
8). Whereas complexes B, C, C', D and E were all observed in extracts
made from 3-day-old hearts (Fig.
3D, lanes 21-30), a factor (A3) that bound to site A with a
distinct mobility and binding specificity compared with A1 and A2 (data not
shown) was additionally observed in 3-day-old heart extracts
(Fig. 3D, compare lane 21 with
lanes 1 and 2).

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Fig. 3. Embryonic gel shift analysis of BMPRE. (A,B) Dissected regions of HH stage
6-8 and 24 (day 3) chick embryos are depicted as boxed regions of whole mount
chick embryos stained by in situ hybridization for Nkx2.5 mRNA. Whole-cell
extracts were made from either anterior lateral plate (ALP) or posterior
primitive streaks (PPS) dissected from stage 6-8 chick embryos (A), or from
hearts (Hrt) from stage 24 (day 3) chick embryos (B). (C) EMSA oligomers
derived from 200 bp BMPRE enhancer sequence (see
Fig. 2). Numbered and colored
horizontal lines show extent of 30 or 40 bp double stranded oligomers used for
gel shift assays. (D) Gel shifts obtained with anterior lateral plate (A),
posterior primitive streak (P) or 3 day heart whole cell extracts. Discrete
shifts were found for eight sites labeled A-E. Sites A1-A3 (nucleotides 1-30),
lanes 1, 2, 21; site B (nucleotides 30-60 and 45-75), lanes 5-8, 23, 24; site
C (nucleotides 60-100), lanes 9, 10, 25; site C' (nucleotides 100-140),
lanes 13, 14, 27; site D (nucleotides 120-160), lanes 15, 16, 28; site E
(nucleotides 160-200), lanes 19, 20, 30. Multiple shifts seen with Site A
oligo in different extracts are labeled separately A1-3 to the left of the
autoradiogram, and are as discussed in the text.
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GATA factor interactions with sites B and C/C' are necessary for BMP responsiveness of CAR3 and cardiac-specific transgene expression
To prioritize our analysis of these various BMPRE-binding activities, we
focused on those binding activities that bind to regions of the BMPRE required
for BMP responsiveness. By performing linker scan mutational analysis through
the 200 bp BMPRE, we found that substitution of 10 nucleotide blocks through
either nucleotides 1-30 or 160-200 of the BMPRE failed to consistently
downregulate the BMP response in transfected P19 cells by greater than 50%
(data not shown). By contrast, linker scan mutations in the central region of
the BMPRE (extending from nucleotides 30 to 160) could strongly reduce and in
some cases completely abolish this response (data not shown). As the binding
sites for complexes B, C, C' and D all lie within this critical region,
we focused our attention on identifying these binding activities.
We noted that complex B interacts with oligomers (#3 and #4,
Fig. 3C) containing a variant
GATA-binding site (AGATTG) (Molkentin,
2000
) (boxed in orange, Fig.
4A), while complexes C and C' interact with oligomers [5 (C)
and 7 (C'), Fig. 3C]
containing sequences similar to the consensus GATA-binding site WGATAR
(Molkentin, 2000
) (boxed in
red in Fig. 4A). Because GATA4,
GATA5 and GATA6 are all expressed in lateral plate mesoderm and embryonic
cardiac tissue (Arceci et al.,
1993
; Heikenheimo et al.,
1994
; Laverriere et al.,
1994
; Morrisey et al.,
1996
; Morrisey et al.,
1997
), we examined whether these GATA factors could interact with
binding sites B, C or C'. As shown in
Fig. 4B, nuclear extracts from
COS cells programmed to express either GATA4, GATA5 or GATA6 specifically
shifted oligomers 3 (site B), 5 (site C) and 7 (site C') by EMSA
(Fig. 4B, lanes 2-4, 10-12 and
18-20). These shifts were significantly diminished by specific mutation of the
GATA consensus binding sites (Fig.
4A,B, lanes 6-8, 14-16 and 22-24).

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Fig. 4. Characterization of BMPRE gel shift binding sites. (A) 200 bp BMPRE is
shown with numbered horizontal lines of selected double-stranded
oligonucleotides shifted by embryonic extracts (see
Fig. 3 and text). Likely
binding sites for embryonic gel shifts are boxed (orange for Site B, red for C
and C', blue for Site D. Nucleotide changes made in mutant oligos are
shown in red under their cognate site and are also highlighted in either white
or red on the 200 bp BMPRE sequence. (B) Gel shifts of putative GATA-binding
sites. Oligomers 3, 5 and 7, containing Sites B, C and C', respectively,
were used in EMSA experiments with nuclear extracts prepared from control COS
cells, or COS cells expressing GATA4, GATA5 and GATA6. All three oligomers
bind all cardiac GATAs (lanes 2-4, site B; lanes 10-12, site C; lanes 18-20,
site C') and binding is greatly reduced or eliminated upon mutation of
consensus GATA-binding sites within the oligomers (lanes 6-8, mutant site B;
lanes 14-16, mutant site C; lanes 22-24, mutant site C'). (C) Gel shifts
and antibody supershifts of either wild-type (WT) (lanes 1-3, 7-9, 13-15 and
19) or mutant (mut) (lanes 4-6, 10-12, 16-18 and 20) site B, C, C' and D
oligomers with day 3 heart whole cell extracts. Supershifts for sites B (lanes
1-6), C (lanes 7-12) and C' (lanes 13-18) were performed with either
control mouse Ig (lanes 1, 4, 7, 10, 13 and 16), anti-GATA4 (lanes 2, 5, 8,
11, 14 and 17) or anti-GATA-6 (lanes 3, 6, 9, 12, 15 and 18) rabbit polyclonal
antibodies as indicated. (D) BMP responsiveness of either wild-type
Nkx2.5-lux-CAR3 reporter or similar reporters bearing mutations in either
sites B, C/C' or D (as diagrammed in A). (E-L) Representative X-gal
stained F0 transient transgenic mice embryos containing either wild type or
mutant Nkx2.5-lacZ-CAR3 reporters. Embryonic stages are shown in the
bottom left-hand corner. Results shown are representative of the following
numbers of transgenic embryos: mut Site B, 11/11 embryos; mut site C/C',
14/15 embryos (1/15 E8.5 embryos displayed residual heart staining); mut Site
D, 7/7 embryos. Abbreviations are as in previous figures.
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To examine if endogenous GATA proteins were also capable of interacting
with putative binding sites B, C or C', we examined whether the gel
shifts of oligonucleotides containing these sites observed with three day
heart extracts could be supershifted with anti-GATA antibodies. Indeed we
found that addition of anti-GATA6 antibody could specifically supershift
complex B (Fig. 4C, lane 3) but
not complexes C and C' (Fig.
4C, lanes 9 and 15), while anti-GATA4 antisera could supershift
approximately half of complexes C and C'
(Fig. 4C, lanes 8 and 14) but
failed to interact with complex B (Fig.
4C, lane 2). Because GATA4, GATA5 and GATA6 can all bind to
oligonucleotides containing site C or C' (see
Fig. 4B) we speculate that the
remainder of complex C or C' not supershifted by either anti-GATA4 or
anti-GATA6 antisera may contain GATA5. Mutation of the putative GATA-binding
sites within the oligonucleotides used for EMSA either abolished or
significantly decreased the formation of complexes B, C and C' with 3
day heart extracts (Fig. 4C,
lanes 4-6, 10-12, 16-18). Together, these findings suggest that complex B
contains GATA6, while complexes C and C' contain GATA4 and GATA5.
Site D binds an activity common to ALP, PPS and day 3 heart extracts. We
observed that a DNA-binding complex on site D was abrogated by a linker scan
mutation at nucleotides 127-137 in the 200 bp BMPRE that strongly inhibited
the BMP responsiveness of a BMPRE-driven reporter in P19 cells
(Fig. 4A; data not shown).
Mutation of these residues abrogated interaction of a protein present in both
day 3 heart extracts and P19 cells with oligo #8 spanning residues 120 to 160
of the BMPRE (Fig. 4C, lanes 19
and 20; data not shown).
To ascertain the importance of either GATA-binding sites (B, C or C')
or site D for BMP responsiveness in vitro or cardiac gene expression in vivo,
mutations that blocked protein-DNA complex formation in vitro (described
above) were built into the 2 kb CAR3. Mutations that eliminate either the
binding of GATA6 to site B, the binding of GATA4/GATA5 to both sites C and
C', or the binding of factor D to site D, each blocked BMP-mediated
induction of a luciferase reporter driven by the Nkx2.5 minimal
promoter appended to CAR3 (Nkx2.5-lux-CAR3)
(Fig. 4D). In addition,
mutation of each of these binding sites significantly diminished lacZ
expression of cognate Nkx2.5-lacZ-CAR3 constructs in transient
transgenic mouse embryos (Fig.
4E-L). Thus, binding sites for GATA4, GATA5, GATA6 and site D are
all necessary for BMP-mediated induction and cardiac-specific gene expression
of CAR3-driven transgenes.
Site D and its associated SMAD binding site comprise a minimal BMP responsive module
Examination of the 200 bp BMPRE in CAR3 revealed that binding sites for
SMAD4 MH1 were located adjacent to a combination of GATA6 and
GATA4/GATA5-binding sites [located in SMAD region 1 (SR1)], a single
GATA4/GATA5-binding site (located in SR2) or site D (located in SR3) (SR1, SR2
and SR3 are shown in Fig. 5A). As SMADs often bind to DNA adjacent to transcription factors whose activity
they modulate (Attisano and Wrana,
2000
; Whitman,
1998
), we evaluated whether reiterated versions of the various
SMAD regions would constitute a minimal BMP inducible regulatory element. We
constructed Nkx2.5 promoter-luciferase reporters driven by either five copies
of SR1 (5xSR1, containing SBE1 and the adjacent GATA6 and
GATA4/GATA5-binding sites), five copies of SR2 (5xSR2, containing SBE2
and the adjacent GATA4/GATA5-binding site), or five copies of SR3
(5xSR3, containing SBE3 and the adjacent factor D binding site)
(Fig. 5A,B). Although
reiteration of either SBE1 with its associated GATA4/GATA5 and GATA6-binding
sites (5xSR1), or SBE2 with its associated GATA4/GATA5-binding site
(5xSR2) failed to constitute a BMP inducible regulatory element,
reiteration of SBE3 with the adjacent factor D-binding site (5xSR3 or
4xSR3) resulted in a BMP inducible regulatory element
(Fig. 5B,C).

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Fig. 5. SMAD-dependent BMP response is associated with site D activity. (A) BMPRE
sequence is displayed. Colored horizontal lines show extent of double-stranded
oligonucleotides used to create multimerized enhancers encompassing SBE1 plus
GATA6 and GATA4/5 binding sites (SMAD region 1 or SR1, orange line), SBE2 plus
GATA4-binding sites (SMAD region 2 or SR2, red line) and SBE3 plus binding
site D (SMAD region 3 or SR3, blue line). Site D and SBE3 mutations are
displayed below sequence of BMPRE in red, and corresponding altered
nucleotides are displayed as white. (B) BMP response of Nkx2.5-lux driven by
either the 2 kb CAR3, the 200 bp BMPRE, or 5x-multimerized repeats of
SR1, 2 or 3. Reporters are shown on the left, with colored arrowheads
representing each repeat and its orientation. Cognate BMP response is shown to
the immediate right of the construct schematic, and is expressed as fold
activation over basal activity. (C) BMP induction of SR3 requires both binding
site D and SBE3. BMP response of Nkx2.5-lux driven by either
4x-multimerized repeats of SR3-WT, or multimers of SR3 bearing mutations
in either binding site D or associated SMAD-binding element 3 (SBE3) (shown in
A). (D) SMAD4 dependence of SR3-mediated BMP response. BMP4 response of
Nkx2.5-lux-4xSR3 was assayed in the SMAD4-deficient MDA-MB468 cell line in the
absence or presence of co-transfected SMAD1 and SMAD4 expression vehicles.
Activation is seen only in the presence of both co-expressed SMAD proteins and
BMP4 (bottom lanes).
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|
SR3 contains adjacent binding sites for factor D and SMAD4. To evaluate the
necessity of these binding sites in SR3 to mediate a BMP response, these sites
were independently mutated in parallel Nkx2.5-lux reporter constructs.
Mutation of either the factor D binding site or the adjacent SBE3 completely
abolished the ability of an SR3-driven reporter to respond to BMP signals
(Fig. 5C). In addition, BMP4
administration was unable to induce the activity of the SR3 reporter in
MDA-MB-468 epithelial cells, which lack endogenous SMAD4 expression
(de Winter et al., 1997
),
unless these cells were supplemented with exogenous SMAD1 and SMAD4
(Fig. 5D). Together, these
results suggest that BMP signaling activates the CAR3 response element, at
least in part, by regulating the transcriptional activity of the site
D-binding factor, and that this modulation requires the presence of a
BMP-activated SMAD complex on the adjacent SBE3 site.
Site D-binding factor is the zinc-finger transcription factor YY1
A detailed examination of nucleotides 115-155 of the BMPRE encompassed by
the SR3 construct revealed the presence of two similar motifs of the sequence
CCATC, present as inverted repeats in nucleotides 120-124 and 135-139.
Comparison of this sequence to known transcription factor binding consensus
sites revealed a similarity between this motif and the binding site for the
Gli-Kruppel zinc-finger transcription factor YY1, CCATNT(A/T) (shown
schematically in Fig. 6A). YY1
is a ubiquitously expressed, multifunctional transcription factor
(Shi et al., 1991
), and has
been implicated in the positive or negative regulation of cardiac genes,
including BNP (Bhalla et al.,
2001
) and cardiac myofibrillar genes
(Chen and Schwartz, 1997
;
Latinkic et al., 2004
;
MacLellan et al., 1994
;
Sucharov et al., 2003
). To
evaluate if YY1 binds to either of the CCATC repeats, we compared the
SR3-binding activities in extracts made from either day 3 chick heart extracts
or P19 cells with that of purified YY1. Mutation of the most 5' putative
YY1 binding site (mutation A) in SR3 failed to significantly affect the
interaction of the SR3 oligomer with either purified YY1 or the binding
activities in either P19 cells or day 3 heart extracts
(Fig. 6B, lane 2). By contrast,
mutation of the 3' most putative YY1-binding site (mutation B) in SR3
abrogated the interaction of the SR3 oligomer with purified YY1 and
significantly decreased interaction of this oligomer with binding activities
present in both embryonic chick heart or P19 cell extracts
(Fig. 6B, compare lanes 1 and
3). In addition, the interaction of the SR3 oligomer with factors present in
either embryonic chick heart extracts or P19 cells was extinguished by
incubation with an anti-YY1 antisera (Fig.
6B, lane 5), supporting the notion that YY1 in such extracts is a
component of the site D binding complex. Consistent with the gel shift
analyses, we found that mutation of YY1 site B eliminated BMP induction of
CAR3 driven reporters in P19 cells (Fig.
6C) and cardiac-specific expression of such reporters in
transgenic mice at both days 7.5 and 10.5
(Fig. 6D,E-G). Because mutation
of the YY1-binding site (mut B) did not alter interaction of the SR3 oligomer
with the SMAD4 MH1 domain in vitro (data not shown), we think it is most
likely that the loss of both BMP responsiveness and heart-specific transgene
expression following mutation of the YY1-binding site (mut B) in CAR3-driven
reporters reflects the loss of YY1 interaction with these sequences.
Conversely, because mutation of SMAD-binding element 3 (SBE3), which lies
adjacent to the YY1 binding site did not alter the interaction of YY1 with the
SR3 oligomer in vitro (data not shown), it seems most likely that the loss of
both BMP responsiveness and heart-specific transgene expression following
mutation of SBE3 in CAR3-driven reporters reflects the loss of SMAD
interaction with these sequences.

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Fig. 6. BMP responsiveness of SR3/CAR3 and cardiac expression of a CAR3-driven
transgene requires intact binding sites for transcription factor YY1. (A)
Sequence of SR3 region encompassing site D (blue box) and SBE3 (green box).
Sense and antisense YY1 consensus binding sites are shown above putative
YY1-binding sites within SR3. Point mutations in putative YY1 binding sites A
and B are shown in red below their cognate nucleotides. (B) YY1 binds to SR3.
EMSA with oligos encoding either WT SR3 (lanes 1 and 5) or SR3 with mutations
in putative YY1-binding site A (lane 2), site B (lane 3) or sites A+B (lane 4)
with either P19 cell nuclear extract (top panel), whole cell extracts from
day3 (HH Stage 24) chick hearts (middle panel) or purified HA-tagged YY1
protein (lower panel). Point mutation of the YY1 consensus binding site B in
the SR3 oligomer significantly decreased or abolished DNA-binding activities
in all samples (lane 3), as did mutations of both sites A and B (lane 4).
Anti-YY1 polyclonal antibody added to the EMSA disrupted the interaction of
factors in both P19 cells and day 3 chick hearts with the SR3 oligomer (lane
5). (C) Point mutation of the YY1 consensus site B in the context of an
Nkx2.5-lux-CAR3 reporter (schematized at top) results in loss of BMP response
in P19 cells. Results are shown in duplicate for wild-type Nkx2.5-lux-CAR3
(left) and Nkx2.5-lux-CAR3 mutB (right). (D-G) YY1-binding sites are required
for CAR3-driven transgene expression in the heart. Representative X-gal
staining patterns are shown for transgenic mice embryos containing
Nkx2.5-lacZ-CAR3 mut B (shown in D). lacZ expression is
abrogated at all stages assayed, indicating a requirement for YY1-binding
sites in CAR3 to drive transgene expression in the heart (compare with the
robust cardiac expression of the parental Nkx2.5-lacZ-CAR3 construct
in Fig. 2D-F). Embryonic stages
are shown in the lower left-hand corner. Results are representative of 3/3
E7.5 and 5/5 E10.5 transgenic embryos. Abbreviations are as in previous
figures.
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The amino terminus of YY1 interacts with the SMAD1/4 complex
Because juxtaposition of adjacent YY1 and SMAD-binding sites are necessary
and sufficient to constitute a BMP response element, we investigated whether
YY1 and SMADs 1/4 associate with one another. Cell extracts from COS cells
expressing epitope-tagged SMAD1, SMAD4 and YY1 were harvested for
co-immunoprecipitation experiments following transient (30 minutes) BMP4
stimulation. We observed that approximately 2% of transfected YY1 was
associated with Myc-tagged SMAD1/SMAD4 complexes under these conditions
(Fig. 7A, lane 4, top panel).
By employing a series of truncation mutants of Flag tagged-YY1 in the
co-immunoprecipitation assay, we mapped the SMAD interaction domain of this
protein to lie between amino acids 1 to 170 near the N terminus of YY1
(Fig. 7B, summarized in
Fig. 7C). By contrast, the
DNA-binding domain of YY1 maps to the zinc fingers located between amino acids
295 to 414 in the C-terminal region of the protein
(Fig. 7C).

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Fig. 7. BMP SMADs associate with the N terminus of YY1: (A) Co-immunoprecipitation
of YY1 with the SMAD1/4 complex. Whole-cell extracts from either
BMP-stimulated COS cells transfected with expression vehicles encoding either
human YY1 (lanes 1-4), Myc-tagged (MT) SMAD1 (lanes 2 and 4) or
myc/Flag-tagged (MT/F)-SMAD4 (lanes 3 and 4). SMAD-associated proteins were
immunoprecipitated from cell extracts with an anti-myc monoclonal antibody,
subjected to polyacrylamide gel eletrophoresis (PAGE) and detected following
western blot with either anti-myc or anti-YY1 polyclonal antibodies. Levels of
YY1 present in the input extract used for immunoprecipitation are shown in
bottom panel. Bands corresponding to YY1, SMAD1 and SMAD4 are indicated by
arrowheads on the right, as are molecular mobility markers. (B) Mapping the
SMAD1/4 interaction domain of YY1 by co-immunoprecipitation. COS cells were
transfected with expression vehicles encoding either wild-type (WT)
Flag-tagged (F)-YY1(1-414) or various Flag-tagged deletion mutants of YY1,
plus expression vehicles encoding MT/F-SMAD4 and MT-SMAD1, as indicated.
SMAD-associated proteins were immunoprecipitated from cell extracts with an
anti-Myc monoclonal antibody, subjected to polyacrylamide gel eletrophoresis
(PAGE) and detected following western blot with anti-Flag monoclonal antibody
(upper panel). Anti-Flag western blot of 2.5% of input used in
co-immunoprecipitation confirms substantial expression of all tagged deletion
mutants of YY1 and SMAD4 in the various cell extracts (lower panel); in
addition, equivalent levels of MT-SMAD1 expression was detected in the various
cell extracts (data not shown). Deletion mutant used in each sample is shown
above the lanes; band representing Flag/MT SMAD 4 (Sm4) is shown by arrowheads
on the right, as are those of YY1 isoforms, bracketed on the right. Results
shown are representative of three independent co-immunoprecipitation
experiments. (C) The SMAD1/4 interaction domain of YY1 maps between residues
1-170. Schematic representation of YY1 structural regions is shown at top
[adapted, with permission, from Thomas and Seto
(Thomas and Seto, 1999 )];
solid bars showing extent of various YY deletion mutants assayed in B. Gray
box identifies SMAD1/4-interacting region of YY1 based upon amino acids shared
by all YY1 deletion mutants that associate with SMAD1/4. Relative strength of
SMAD1/4 association of various YY1 deletion mutants is indicated on extreme
left by either +++ (strong association), ++ (weak but detectable association),
no mark (no detectable association). (D) Co-expression of YY1(261-414), which
lacks the SMAD1/4 interaction domain, inhibits BMP induction of a CAR3-driven
reporter. P19 cells were transfected with Nkx2.5-lux-CAR3,
Tk-renilla-luciferase (for normalization) and expression vehicles encoding
either SMADs1 and 4 and p21E1b (to inhibit apoptosis due to loss of YY1
activity), plus increasing amounts (0-100 ng/well) of expression vectors
encoding either wild-type YY1(1-414) (right lanes) or N-terminally truncated
YY1(261-414) (left lanes). YY1(261-414) is able to bind to Site D in SR3 (data
not shown) but is incapable of SMAD1/4 interaction (see above), and blocks the
ability of BMP signals to induce the expression of a CAR3-driven reporter.
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A mutant form of YY1 lacking the SMAD interaction domain blocks BMP induction of a CAR3 reporter
Because an N-terminal truncation mutant of YY1 containing amino acids
261-414 retains an intact zinc-finger domain, can bind to YY1-binding sites
[including those in the CAR3 BMPRE (data not shown)] but lacks the SMAD1/4
interaction domain (Fig. 7B,C),
we employed this mutant version of YY1 to investigate whether a YY1/SMAD
interaction was necessary for BMP signals to modulate expression of a
CAR3-driven reporter. P19 cells were co-transfected with the Nkx2.5-lux-CAR3
reporter plus expression vehicles encoding SMAD1/SMAD4 and increasing amounts
of expression vehicles encoding either wild-type YY1(1-414) or YY1(261-414),
and assayed for luciferase expression following 18 hours of treatment with
BMP4. In addition, we included an expression vehicle encoding the p21E1b
protein to block apoptosis (Kranenburg et
al., 1995
), which could potentially result following loss of YY1
activity (Y. Shi, personal communication). Although co-expression of
increasing amounts of wild-type YY1(1-414) did not significantly affect the
ability of BMP4 to induce the expression of this CAR3-driven reporter
construct (Fig. 7D, right
lanes), co-transfection with increasing amounts of YY1(261-414) markedly
attenuated induction of this reporter by BMP signals
(Fig. 7D, left lanes).
Together, these finding suggest that YY1 recruitment of SMAD1/4, which is
mediated by interaction with the N terminus of YY1, is necessary to coordinate
a BMP-mediated induction of the chick Nkx2.5 CAR3 enhancer.
 |
Discussion
|
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Identification of three cardiac activating regions flanking the chick Nkx2.5 gene that combinatorially drive transgene expression in the developing heart
In this work, we have identified three cardiac-activating regions (CAR1,
CAR2 and CAR3), which surround the chick Nkx2.5 gene, that in
combination can drive transgene expression in a pattern which recapitulates
many aspects of endogenous Nkx2.5 expression. One of these regulatory
sequences (CAR3), located 3' to Nkx2.5-coding sequences, was able to
drive robust transgene expression in both the primary and secondary heart
fields, maintain expression in the outflow tract and right ventricle, and
direct reporter gene expression in a BMP-responsive fashion. Chick
Nkx2.5 CAR2 contains a highly conserved region that is present in
both mouse and human Nkx2.5 loci
(Searcy et al., 1998
), and
like its murine counterpart [termed AR2
(Schwartz and Olson, 1999
)] is
capable of driving transgene expression in both the cardiac crescent and in
the outflow tract. Although the more 5' chick Nkx2.5 CAR1 does
not drive transgene expression in the primary heart field, when linked to CAR2
and CAR3 it extends the maintenance of transgene expression in the maturing
heart to include the left ventricle. Notably, CAR1, CAR2 and CAR3 alone or in
combination fail to drive transgene expression in the atria, where endogenous
Nkx2.5 is also expressed.
Although these enhancers drive accurate cardiac expression of
ß-galactosidase expression in transgenic mouse assays, only CAR2 is well
conserved between mammalian and avian species
(Liberatore et al., 2002
;
Lien et al., 2002
). The
absence of a similarly conserved CAR3-like element in genomic regions flanking
the mouse or human Nkx2.5 genes suggests that different species
employ a variety of regulatory sequences to drive expression of
Nkx2.5 homologs in the heart. However, in all cases examined to date,
GATA- and SMAD-binding sites play an essential role in the activity of the
regulatory sequences that drive Nkx2.5 expression in the forming heart.
Indeed, Bob Schwartz and colleagues have recently characterized a regulatory
element (termed G-S) located
6 kb upstream of the mouse Nkx2.5
gene, which contains 27 consensus and five interspersed non-consensus
GATA-binding sites followed by nine consensus SMAD-binding sites, that
responds to BMP signals in transfected P19 cells and is capable of driving
transgene expression in both the cardiac crescent and lateral plate mesoderm
(Brown et al., 2003
). Thus, it
is possible that BMP-mediated induction of Nkx2.5 expression relies upon
regulatory sequences that either contain a minimal number of GATA- and
SMAD-binding sites positioned adjacent to another SMAD-regulated transcription
factor, such as YY1 (as in chick Nkx2.5 CAR3), or relies upon a
highly reiterated number of GATA-and SMAD-binding sites (as in the murine
Nkx2.5 G-S sequence), which can respond to BMP signals in the absence
of other associated SMAD-regulated transcription factors.
BMP signals modulate Nkx2.5 expression by several synergistic pathways
Detailed mutagenesis of a 200 bp BMPRE within CAR3 revealed that binding
sites for GATA4, GATA5, GATA6, SMAD1/4 and YY1 are all necessary for both
BMP-mediated activation and cardiac-specific expression of reporter constructs
driven by this regulatory region. Our findings indicate that BMP signaling
engages several pathways to induce the expression of the Nkx2.5 gene
in cardiac progenitor tissue (Fig.
8). BMP signals are known to be transduced via BMP
receptor-activated SMAD1, SMAD5 or SMAD8, which bind to DNA in complex with
SMAD4. SMAD proteins have been documented to bind to consensus SBEs in both
distal and proximal regulatory elements in the murine Nkx2.5 gene
[i.e. AR1 and AR2 (Liberatore et al.,
2002
; Lien et al.,
2002
)], and in the chick Nkx2.5 CAR3 enhancer (this
work). Interestingly, while SBE1, SBE2 and SBE3 in CAR3 are all required to
maintain expression of transgenes in day 10.5 mouse hearts, the initiation of
CAR3-driven transgene expression in the cardiac crescent of day 7.5 mouse
embryos requires only SBE3, suggesting that the transcription factors required
to induce versus maintain CAR3-driven Nkx2.5 gene expression may be
distinct.

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Fig. 8. CAR3-mediated cardiac expression requires the collaboration of multiple
factors. Diagram outlines three arms of BMP signaling that synergistically
activate CAR3-driven cardiac expression: SMAD nuclear localization and direct
interaction with SBE sites located in CAR3; induction of cardiac GATA
proteins; and SMAD-mediated modulation of the activity of the ubiquitously
expressed YY1 repressor/activator.
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BMP signals are also necessary for GATA4, GATA5 and GATA6 gene expression
in cardiac precursor cells (Andree et al.,
1998
; Schlange et al.,
2000
; Schultheiss and Lassar,
1997
) and are sufficient to induce expression of GATA4, GATA5 and
GATA6 in explants of chick paraxial mesoderm (R. Reshef, H. Kempf and A.L.,
unpublished). Interaction of these GATA factors with both distal and proximal
regulatory elements in the mouse Nkx2.5 enhancer and with the chicken
CAR3 enhancer are also essential for cardiac-specific activity of these
regulatory elements. It is interesting that all of the well-characterized
murine and chick Nkx2.5 sequences which drive expression in the
primary heart field contain essential GATA-binding sites
(Brown et al., 2003
;
Lien et al., 1999
;
Searcy et al., 1998
),
consistent with the finding in zebrafish that GATA5/Faust is essential for
Nkx2.5 expression in this species (Reiter
et al., 1999
) and underline the importance of GATA proteins in
either the induction or maintenance of Nkx2.5 gene expression.
Finally, we have documented that SMAD1/SMAD4 interaction with YY1 modulates
the activity of this transcription factor when bound to an adjacent
SMAD-binding site in the chick Nkx2.5 CAR3 enhancer and have found
that this interaction is essential for the BMP-responsiveness of this
regulatory element. Thus, BMP signals modulate the activity of the chick
Nkx2.5 CAR3 enhancer by: (1) enabling SMAD complexes to directly bind
to this regulatory element; (2) inducing the expression of GATA4, GATA5 and
GATA6, which also bind to this regulatory region; and (3) modulating the
activity of YY1 when bound to an adjacent SMAD-binding site in CAR3 (see
Fig. 8).
BMP-activated SMADs modulate YY1 transcriptional activity
A SMAD1/SMAD4-binding site that lies immediately adjacent to the
YY1-binding site in CAR3 was found to be crucial for both BMP-mediated
activation of this regulatory sequence and expression of CAR3-driven
transgenes in the early cardiac crescent. Reiteration of this YY1 binding site
and the adjacent SMAD1/SMAD4-binding site was sufficient to constitute a
BMP-responsive element. We think it is most likely that BMP signals are
modulating the transcriptional activity of YY1 bound to CAR3 as opposed to
modulating YY1 expression or DNA interaction as we have not observed a change
in YY1-binding affinity for the CAR3 YY1-binding site in gel shift experiments
using nuclear extracts from either SMAD overexpressing or BMP-stimulated P19
cells, nor do these conditions result in a change in YY1 protein expression
levels, as assayed by western blot (data not shown). However, we observed by
co-immunoprecipitation assay that the N-terminal region of YY1 interacts with
the SMAD1/SMAD4 complex. Furthermore, we found that an N-terminal truncation
mutant of YY1 lacking this SMAD-interacting domain but capable of binding to
DNA acts in a dominant-negative fashion to inhibit BMP-mediated induction of
the chick Nkx2.5 CAR3 enhancer. Although we mapped the SMAD1/SMAD4
interaction domain of YY1 to the N terminus, others have documented
interaction of the C-terminal zinc-finger domain of YY1 with SMAD4
(Kurisaki et al., 2003
), which
was not evident in our analysis. At present, we cannot account for this
difference; however, this discrepancy may reflect the different experimental
assays employed to map the SMAD interaction domains of YY1 in these two
studies, co-immunoprecipitation (present study) versus GST-pull down
(Kurisaki et al., 2003
).
Interestingly, Kurisaki and colleagues have implicated YY1 as a repressor of
SMAD-mediated TGFß responses in fibroblast cell lines
(Kurisaki et al., 2003
), and
presented evidence that YY1 overexpression correspondingly attenuated the
association of activated SMAD complexes with multiply reiterated SBEs. These
results are not inconsistent with our finding that YY1 and SMADs
synergistically activate the Nkx2.5 CAR3 enhancer, as it is possible
that YY1 recruits SMAD complexes to regions of the genome containing both YY1
and adjacent SMAD-binding sites at the expense of other SMAD targets that lack
adjacent YY1-binding sites.
How might the interaction of SMADs with YY1 modulate the activity of this
transcription factor when bound to CAR3? Because YY1 can function as either a
transcriptional activator or repressor
(Shi et al., 1991
;
Thomas and Seto, 1999
), SMAD
association with YY1 may serve to recruit co-activators that modulate the
activity of this transcription factor to become an efficient transcriptional
activator. Indeed, recruitment of co-activators such as p300 by TGFß
activated SMADs is a well-characterized mechanism for SMAD target gene
activation (Attisano and Wrana,
2000
; Whitman,
1998
). Similarly, known interacting partners of YY1 also include
several members of the histone deacetylase family
(Galvin and Shi, 1997
;
Thomas and Seto, 1999
;
Yao et al., 2001
) as well as a
histone H4 methylase (Rezai-Zadeh et al.,
2003
), which have been implicated in either transcriptional
repression or activation of YY1 regulated target genes, respectively. It will
be interesting to determine if SMAD association with YY1 alters the
interaction of this transcription factor with either of these families of
histone modifying enzymes, and to what extent chromatin modification is
responsible for appropriate regulation of Nkx2.5.
SMAD-mediated modulation of YY1 activity adds an interesting new facet to
the repertoire of functions of YY1 during heart development, which also
includes direct recruitment of transcriptional co-activators to promote the
expression of cardiac B-type natriuretic peptide
(Bhalla et al., 2001
),
inhibition of the expression of the cardiac
-actin gene
(Chen and Schwartz, 1997
), and
both activation and inhibition of the expression of the cardiac-specific
Mlc2 gene (Latinkic et al.,
2004
). Clearly, the context within which YY1 functions is of great
importance, and it is likely that transcription factors such as GATA and SMAD
proteins, when bound to neighboring cognate binding sites, modulate either the
association of co-factors with adjacently bound YY1 or the activity of such
co-factors. In addition to the GATA, YY1- and SMAD-binding sites, linker
scanning mutational analysis of the chick Nkx2.5 CAR3 BMPRE has
revealed other sites yet to be characterized that also have a significant
impact on the BMP response of this regulatory element (K.-H.L. and A.B.L.,
unpublished). A complete understanding of complex enhancers such as
Nkx2.5 CAR3 will require not only the identification of the
transcription factors that regulate their expression but also elucidation of
the transcriptional co-factors that are recruited to such regulatory elements
in a combinatorial fashion.
 |
ACKNOWLEDGMENTS
|
|---|
We thank Tucker Collins, Gary Felsenfeld, Mona Nemer, Stuart Orkin, Ed
Seto, Tom Schultheiss, Yang Shi, Guangchao Sui, Sergei Tevosian and Malcolm
Whitman for kindly supplying us with plasmids; Genetics Institute/Wyeth
Pharmaceuticals for supplying us with recombinant human BMP2; and Lena Du and
Arlene Sharpe at the Brigham and Women's Hospital transgenic core facility for
superb assistance with production of transgenic mice. Particular thanks to
Yang Shi and Guangchao Sui for both purified YY1 and for their very helpful
suggestions; and to Malcolm Whitman for his excellent advice and generous
contribution of salary support for K.-H.L. This work was supported by grants
to A.B.L. (RO1-HL58862) and K.-H.L. (K08HL003371) from the National Heart,
Lung and Blood Institute of the NIH; and to Malcolm Whitman
(RO1-HD-29468).
 |
Footnotes
|
|---|
Supplementary material
Supplementary material for this article is available at
http://dev.biologists.org/cgi/content/full/131/19/4709/DC1
 |
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