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Fig. 2. Depth coding and 3D reconstruction of neighboring neural crest cells reveals contacts between neighboring cells. (A-C) Depth coding (in z-height) reconstruction of a confocal z-stack through neighboring neural crest cells in a live fluorescently-labeled (Gap43-EGFP and H2B MRFP) chick embryo emphasizes the filopodial connections between cells in a migrating r6 stream near the third branchial arch (ba3). The z-stack represents the neighboring cells shown in Fig. 1E. (A) A migrating cell (asterisk) has connections with two different migrating cells (arrow and arrowhead). The depth code shows the depth to the filopodia and the different parts of the cell, and z-height differences between each filopodium. The connections are very different; one cell is making a double connection with two filopodia (arrow; top left corner) while the other cell is stretching out a thicker filopodium, which is making a side connection with a neighboring cell (arrowhead; bottom right corner). (B) A magnified view reveals that the contacts are in the same z-plane (green-to-green and light blue-to-green) between the two cells. (C) A magnified view of the side connection (arrowhead) between the two neighboring cells shows that the two cells may not be in contact with one another, but that there may be as much as 14 µm in z-height difference. The color code ranges from 0 (blue) to 14 µm (red). (D-F) 3D rendering of the same confocal z-stack. (D) The main cell (asterisk) has multiple filopodial connections between two different cells while migrating. The first connection (arrow) shows two outstretched filopodia contacting a neighboring neural crest cell. The thick connection (arrowhead) shows a possible connection between the neighboring cells toward the bottom right corner. (E) A magnified view reveals the local contacts (arrow). (F) Surprisingly, the 3D reconstruction and rotation of the data stack shows there is a separate branch of the extending filopodium that is definitely in contact with the neighboring cell (arrowhead). This contact was not visible in either the flat projection or the depth coding of the z-stack. Scale bars: 10 µm.





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