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Figure 2


Fig. 2. Gene orthology. Numbers indicate percentage of 1000 bootstrap replications in which the branch was found. (A) Phylogeny of Dlx2 genes rooted with a shark sequence. Monophyletic clades containing Dlx2a genes and Dlx2b genes were found in 85% and 100% of bootstrap replicates, respectively. (B) Phylogeny of Pax9 genes (rooted with Pax1 genes) matches that of the species with high bootstrap support (92-100%). (C) Phylogeny of Fgf8 and Fgf17 genes rooted in the midpoint of the longest path between terminal taxa. Ninety-nine percent of the bootstrap trees support orthology of zebrafish and Astyanax fgf8. (D) Phylogeny of Lhx6 and Lhx8 genes with midpoint rooting. Ninety percent of the bootstrap trees support orthology of zebrafish and Astyanax lhx6. (E) Alignment of exon 2 of Pitx2, Pitx3 and Pitx1. Periods indicate matches to the uppermost sequence. The Astyanax gene has a single mismatch with zebrafish pitx2, but no recognizable homology to Pitx1 and Pitx3 genes.





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