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First published online February 9, 2006
doi: 10.1242/10.1242/dev.02276
Review |
1 Institute of Molecular Biology, University of Oregon, Eugene, OR 97403,
USA.
2 Institute of Biochemistry, ETH Zürich, Hönggerberg, 8093
Zürich, Switzerland.
* Author for correspondence (e-mail: thimo.kurz{at}bc.biol.ethz.ch)
SUMMARY
The ubiquitin protein conjugation system tags proteins with the small polypeptide ubiquitin. Most poly-ubiquitinated proteins are recognized and degraded by the proteasome, a large multi-subunit protease. Ubiquitin-dependent protein degradation is used as a regulatory tool for many essential processes, the best studied of which is eukaryotic cell cycle progression. More recently, genetic studies in C. elegans have identified multiple roles for the ubiquitin system in early development, where ubiquitin-dependent protein degradation governs such diverse events as passage through meiosis, cytoskeletal regulation and cell fate determination.
Introduction
Ubiquitin-mediated proteolysis, discovered over 25 years ago
(Ciechanover et al., 1980
;
Hershko et al., 1980
),
covalently attaches ubiquitin polypeptide chains to proteins, targeting them
for degradation by the 26S proteasome (see
Box 1). The proteasome recycles
ubiquitin-tagged proteins by hydrolyzing them into their constituent amino
acids, allowing for their subsequent reincarnation into newly translated
protein (Voges et al., 1999
).
Originally viewed as simply mediating the disposal of mis-folded or otherwise
spent proteins, we now know that ubiquitin-mediated proteolysis is much more
than a cellular composting program. Like phosphorylation, it is an ubiquitous
form of post-translational regulation.
Regulatory roles for ubiquitin first emerged when cell cycle transitions
were found to depend extensively on the rapid, ubiquitin-mediated degradation
of cyclins, conserved proteins that bind to, activate and provide target
specificity for regulatory protein kinases
(Glotzer et al., 1991
;
Hershko et al., 1991
). Most of
these insights came from biochemical studies of frog oocyte extracts and from
genetic studies in budding and fission yeast
(Morgan, 1997
;
Murray, 2004
). Here, we
summarize recent advances from genetic studies in the soil nematode
Caenorhabditis elegans that have identified additional roles. As
discussed in this review, C. elegans exploits ubiquitin-mediated
proteolysis to regulate several essential processes during early
embryogenesis, including cell cycle progression, cytoskeletal function and
cell fate determination.
Ubiquitination and cell cycle progression
The mitotic cell cycle involves a sequence of transitions that include
entry into DNA replication and the subsequent duplication of chromosomes (S
phase), followed by entry into mitosis and the subsequent segregation of
duplicated chromosomes to each of two daughter cells (M phase). Progression
through the cell cycle requires the activity of cell division kinases, which
must bind to cyclin proteins to be active
(Morgan, 1997
;
Murray, 2004
). Cyclins were so
named because they accumulate to peak levels at specific times during the cell
cycle, thereby activating cell division kinases at appropriate moments. A
regulatory role for ubiquitin in the cell cycle was discovered when it was
shown that cyclins are targeted for rapid degradation during the cell cycle by
poly-ubiquitination (Glotzer et al.,
1991
; Hershko et al.,
1991
).
Additional roles for ubiquitination emerged from studies of the
metaphase-to-anaphase transition during mitosis
(Peters, 2002
). Early in
mitosis, the duplicated chromosomes (sister chromatids) condense and are held
together by a multi-protein cohesin complex. As the bipolar mitotic spindle
forms, sister chromatid pairs become captured by microtubules such that each
spindle pole is attached to only one sister. Oppositely directed forces
applied to the chromatid pairs cause them to align midway between the poles at
the metaphase plate. Subsequently, during anaphase, sister chromatids are
pulled apart and segregated to opposite poles
(Gadde and Heald, 2004
).
The transition to anaphase during mitosis requires the proteolytic cleavage
of one cohesin subunit, called Scc1 in budding yeast, by a cysteine protease
called separase. This protease is tightly regulated, as premature cleavage
would lead to early anaphase onset and to chromosome-segregation defects. To
prevent premature cleavage, separase is kept inactive by a protein called
securin. Only after the poly-ubiquitination of securin by an ubiquitin E3
ligase called the anaphase promoting complex/cyclosome (APC/C; see
Fig. 1 and
Box 1) is separase released to
cleave Scc1 (Nasmyth, 2001
).
APC/C E3 ligase activity is controlled by spindle assembly checkpoint proteins
(Nasmyth, 2005
;
Cleveland et al., 2003
;
Amon, 1999
). These regulators
have the remarkable ability to sense whether all sister chromatid pairs are
properly captured by microtubules, with tension indicating bipolar attachment
and alignment at the metaphase plate. As long as there are unattached
chromatids, the spindle checkpoint prevents activation of the APC/C.
The APC/C is a widely conserved, multi-subunit RING-type E3 ubiquitin
ligase (see Box 1 and
Fig. 1), with well-documented
roles in cell cycle progression (Peters,
2002
). In budding yeast, the APC/C consists of at least 12
subunits (see Table 1 and
Fig. 1). Although the functions
of many subunits remain unclear, two activators called Cdc20/Fizzy and
Cdh1/Fizzy-related are likely substrate-specific adaptors that recruit target
proteins to the APC/C for poly-ubiquitination
(Kraft et al., 2005
;
Pfleger et al., 2001
) (see
Box 1). Progression through
meiosis in budding yeast also requires the APC/C, when securin ubiquitination
frees separase to cleave the meiosis-specific cohesin Rec8, triggering meiotic
anaphase (Salah and Nasmyth,
2000
; Nasmyth,
2001
). Curiously, the APC/C does not appear to be required for
Xenopus meiotic divisions (Peter
et al., 2001
; Taieb et al.,
2001
).
|
|
| Box 1. The ubiquitin proteasome system
Ubiquitination entails the covalent modification of target proteins with a
chain of at least four ubiquitin (Ub) proteins (see
figure), each only 76 amino
acids in size, that target a protein for recognition and degradation by the
26S proteasome (Chau et al.,
1989
|
The APC/C and cell cycle progression in C. elegans
As in other organisms, the APC/C is required for progression through
meiosis and mitosis in C. elegans. Meiosis begins during oogenesis,
in the U-shaped hermaphrodite ovary, a syncytial tube of peripherally located
nuclei (Albertson et al., 1997
;
Hubbard and Greenstein, 2000
)
(see Fig. 2). After
fertilization, meiosis is completed, extruding chromosomes into two small
polar bodies to generate a haploid female pronucleus
(Fig. 2). Several groups have
identified C. elegans APC/C mutants that arrest in metaphase of
meiosis I, or exhibit germline mitosis and other meiosis defects
(Table 1). Genome-wide RNAi
screens also have implicated the APC/C and ubiquitin-mediated proteolysis in
meiotic progression (Kamath et al.,
2003
; Sonnischen et al.,
2005
; Gunsalus et al.,
2005
).
Most of the mutant APC/C alleles identified in C. elegans are
temperature sensitive, and at semi-permissive temperatures these mutations can
cause abnormalities during meiosis I or II, suggesting that the APC/C
functions in both meiotic divisions
(Shakes et al., 2003
). The
defects during meiosis II include a failure to separate sister chromatids and
an elongated spindle. However, no metaphase arrests have been observed,
leaving it unresolved whether the metaphase-to-anaphase transition in meiosis
II requires the APC/C. Indeed, there is evidence that anaphase onset during
meiosis II is controlled by another ubiquitin E3 ligase
(Liu et al., 2004
;
Sonneville and Gonczy, 2004
)
(see below). Finally, no defects in mitotic cell cycle progression in early
embryonic cells have been documented in APC/C mutants shifted to fully
restrictive temperatures after the completion of meiosis
(Golden et al., 2000
). Thus,
it remains unknown whether the APC/C is required for anaphase onset during
mitosis in early embryonic cells. Furthermore, substrates targeted for
degradation by the APC/C in C. elegans have not yet been
identified.
Cullin-based E3 ligases
Progression through the cell cycle is also regulated by other multi-subunit
E3 ligases that use proteins called cullins as scaffolds (see
Fig. 1). Most animal genomes
encode five cullin family members (cullin 1 to cullin 5), with one member of
each subfamily present in C. elegans
(Pintard et al., 2004
). Cullin
1-based SCF (after the Skp1, cullin 1 and F-box subunits) and cullin 2-based
ECS ligases (after the elongin B/C, cullin 2 and SOCS box subunits) constitute
two distinct E3 subclasses (see Fig.
1). In SCF complexes, the cullin 1 scaffold binds through its N
terminus to a substrate-recognition module consisting of Skp1 (suppressor of
kinetochore protein 1) and an F-box protein. The small ring-finger protein
Rbx1 (ring box protein 1) binds to the C terminus of cullin 1 and recruits an
E2 ubiquitin-conjugating enzyme, positioning the E2 ubiquitin moiety near the
substrate (Willems et al.,
2004
; Deshaies,
1999
) (see Box 1
and Fig. 1A). One well-characterized SCF E3 ligase is required for the G1 to S
transition that initiates DNA replication prior to mitosis in budding yeast
(Willems et al., 2004
;
Deshaies, 1999
).
|
C. elegans cullin 2 and meiosis II
In C. elegans, cullin 2 (CUL-2) E3 ligases, in addition to the
APC/C, are required for cell cycle progression. For example, worms lacking
CUL-2 fail to enter S phase in the germline
(Feng et al., 1999
). Depletion
of the cell division kinase CKI-1 rescues this cell cycle arrest, suggesting
that CKI-1 may be a target of a CUL-2-based E3 ligase
(Feng et al., 1999
). Loss of
CUL-2 function also impairs meiosis in the early embryo, delaying both the
onset of meiosis II anaphase and exit from meiosis II
(Liu et al., 2004
;
Sonneville and Gönczy,
2004
). Similar meiosis defects are observed after depletion of
RBX-1 or of ELB-1/ELC-1 (Elongin B1/Elongin C1)
(Liu et al., 2004
;
Sasagawa et al., 2005
;
Sasagawa et al., 2003
).
Furthermore, ELB-1 and ELC-1 form a stable complex, and ELC-1 binds CUL-2,
indicating that an ECS E3 ligase is required for progression through meiosis
II (Liu et al., 2004
;
Sasagawa et al., 2005
). The
meiosis II defects in mutants lacking CUL-2 are not a result of a failure to
degrade the meiosis-specific cohesin REC-8
(Liu et al., 2004
), and thus
the targets of CUL-2 during meiosis II remain unknown. Meiosis I progresses
normally in mutants lacking CUL-2 function
(Liu et al., 2004
;
Sonneville and Gönczy,
2004
), while the APC/C appears to promote the transition to
anaphase only during meiosis I (see Table
1 and above). Presumably the two meiotic divisions require
different sets of E3 targets, accounting for the use of two distinct ligases.
Nevertheless, CUL-2 may act redundantly with the APC/C in meiosis I, as CUL-2
loss of function enhances the meiosis I defects in temperature-sensitive APC/C
mutants (Sonneville and Gönczy,
2004
).
The Armadillo repeat protein ZYG-11 is potentially a substrate-specific
adaptor for CUL-2, as zyg-11() mutants exhibit the same
meiosis II defects that result from CUL-2 inactivation
(Liu et al., 2004
;
Sonneville and Gönczy,
2004
). However, germline proliferation requires only CUL-2 and not
ZYG-11 (Liu et al., 2004
).
Thus, ZYG-11 may recruit only a subset of the CUL-2 targets. Like some
adaptors in other cullin-based E3 ligases, ZYG-11 is itself degraded in a
CUL-2-dependent manner (Sonneville and
Gönczy, 2004
). However, ZYG-11 does not contain a SOCS box, a
hallmark of CUL-2 substrate adaptors (Kile
et al., 2002
), and thus far there is no evidence for a physical
interaction between ZYG-11 and a potential substrate, or between ZYG-11 and
both ELC-1 and CUL-2. Hence, ZYG-11 may activate CUL-2 through an as yet
unidentified mechanism, rather than acting as a substrate-specific
adaptor.
Although the targets of CUL-2 and ZYG-11 remain unknown, the two B-type
cyclins B1 and B3 have been shown to accumulate during meiosis in the absence
of CUL-2 (Liu et al., 2004
;
Sonneville and Gönczy,
2004
). This result may explain the observed M-phase delay in
cul-2() mutants, as the destruction of B-type cyclins is known
to be required for mitotic exit (Glotzer
et al., 1991
; Peters,
1999
). The inactivation of either cyclin B1 or cyclin B3 in
cul-2() and zyg-11() mutants alleviates the
meiotic exit delay, but not the delay in anaphase onset
(Liu et al., 2004
;
Sonneville and Gonczy, 2004
).
Thus, cyclins B1 and B3 may be substrates for a putative CUL2ZYG-11
ligase. Alternatively, the upregulation of cyclins B1 and B3 could be an
indirect result of a failure to degrade other CUL-2 targets.
In summary, multiple E3 ligases regulate cell cycle progression in the early C. elegans embryo, while the substrates that are targeted for degradation remain unidentified. Finding the substrates would greatly improve our understanding of these regulatory events.
Ubiquitination and cytoskeletal dynamics
The transition from oogenesis to embryogenesis is a key step in animal
development. In C. elegans, an oocyte remains diploid until
fertilization by a haploid sperm. Subsequently, oocyte meiosis is completed to
generate a haploid maternal complement of chromosomes and thus a diploid
zygote. As in other animals, the female meiotic spindles are small and
acentrosomal, although the much larger mitotic spindles that assemble shortly
after meiosis are organized by centrosomes (Figs
2 and
3). Thus, the transition from
oogenesis to embryogenesis includes the proper regulation of microtubule
dynamics and spindle assembly during meiosis and then mitosis. In C.
elegans, a key player in this transition is the microtubule severing
complex called katanin (McNally and Vale,
1993
; Srayko et al.,
2000
). Katanin is required for meiotic spindle assembly,
presumably by promoting the presence of short microtubules, but must be
downregulated after meiosis to permit the assembly of much larger mitotic
spindles (Mains et al., 1990
;
Clark-Maguire and Mains,
1994a
; Clark-Maguire and
Mains, 1994b
; Srayko et al.,
2000
; Kurz et al.,
2002
; Pintard et al.,
2003a
; Yang et al.,
2003
).
C. elegans CUL-3 and katanin downregulation
Katanin downregulation requires a cullin 3-based E3 ubiquitin ligase.
Depletion of C. elegans CUL-3 prevents katanin degradation after
meiosis, causing defects during mitosis in microtubule stability, spindle
positioning and chromosome segregation
(Kurz et al., 2002
;
Pintard et al., 2003a
;
Pintard et al., 2003b
).
Although cullin 1 and cullin 2 scaffolds were known to be required for
assembling SCF and ECS ligases (see Fig.
1), little was known about the other cullin sub-families. Thus,
the discovery that CUL-3 is required for katanin downregulation suggested that
a novel class of ubiquitin E3 ligases targets katanin for proteolysis.
Analysis of a C. elegans protein called MEL-26 has substantially
advanced our understanding of the CUL-3 E3 ligase that targets katanin
(Pintard et al., 2003b
).
Previous work had shown that MEL-26 is required for katanin downregulation and
that it contains a BTB (Bric-a-Brack, Tramtrack and Brahma) domain, which is
also found in several transcription factors but was of unknown function
(Dow and Mains, 1998
).
Subsequent crystallographic studies revealed that the adaptor proteins Skp1
and Elongin C bind to cullin 1 and cullin 2, respectively, through diverged
BTB folds (Stebbins et al.,
1999
; Schulman et al.,
2000
; Stogios et al.,
2005
; Zheng et al.,
2002b
). These data suggested that MEL-26 functions as a
substrate-specific adaptor. Consistent with this model, MEL-26 binds to the N
terminus of CUL-3 through its BTB fold
(Furukawa et al., 2003
)
(Pintard et al., 2003b
;
Xu et al., 2003
), and to one
katanin subunit, called MEI-1, through a C-terminal MATH (meprin and TRAF
homology) domain (Pintard et al.,
2003b
; Xu et al.,
2003
) (see Fig.
1C). MEI-1 contains a high-scoring PEST motif, a sequence present
in many short-lived proteins. A dominant mutation in this PEST motif results
in a loss of binding to MEL-26 and post-meiotically stable MEI-1/katanin
activity (Pintard et al.,
2003b
; Xu et al.,
2003
). Moreover, MEL-26, like some substrate-specific adaptors for
SCF E3 ligases, is itself targeted for degradation by CUL-3
(Luke-Glaser et al., 2005
;
Pintard et al., 2003b
).
Finally, CUL-3 and MEL-26 can mediate the poly-ubiquitination of MEI-1 in
vitro (Furukawa et al., 2003
),
confirming that MEL-26 is a substrate-specific adaptor for an ubiquitin E3
ligase.
The direct interaction of MEL-26 with both CUL-3 and MEI-1 distinguishes it
from SCF and ECS adaptors, in which one component binds to the cullin, while a
second binds to the first component and to the substrate
(Fig. 1). Intriguingly, the
C. elegans genome encodes 47 proteins with both a BTB domain and
another protein-protein interaction domain, while the human genome encodes 103
such proteins (Xu et al.,
2003
). Many of the C. elegans MEL-26-like proteins
specifically bind to CUL-3 and not to other cullins
(Furukawa et al., 2003
;
Xu et al., 2003
), suggesting
that CUL-3 may form multiple ligases with different MEL-26-like BTB proteins.
Thus, the CUL-3MEL-26 E3 ligase appears to be the founding member
of a third class of cullin-based RING-type E3 ligases. One MEL-26-like human
protein is mutated in an axonal neuropathy
(Bomont et al., 2000
).
|
MEL-26 promotes actomyosin forces through a direct interaction with POD-1
(Luke-Glaser et al., 2005
), a
cortically localized, coronin-like, microfilament-binding protein required for
cytokinesis (Rappleye et al.,
1999
). The MATH domain of MEL-26 binds POD-1, and this interaction
is required for the cortical localization of MEL-26
(Luke-Glaser et al., 2005
). A
point mutation in MEL-26 that prevents POD-1 binding also blocks MEL-26
cortical localization but does not promote excess cortical contractility upon
inactivation of CUL-3, even though POD-1 remains at the cortex
(Luke-Glaser et al., 2005
).
Thus, the excessive furrowing observed in cul-3() mutants is
mediated by MEL-26 through its interaction with POD-1. Importantly, POD-1 is
not a target of the CUL-3MEL-26 ligase, as POD-1 levels are not
elevated in cul-3() mutants
(Luke-Glaser et al., 2005
).
Instead, the failure to lower MEL-26 levels in cul-3() mutants
promotes excess furrowing, although the mechanism by which MEL-26 stimulates
POD-1/coronin remains unknown. These findings highlight the indirect defects
that can occur when E3 ligases are inactivated, owing to some E3 components
having additional functions unrelated to substrate ubiquitination.
Cytoskeleton defects and the Nedd8 ubiquitin-like protein conjugation pathway
The discovery that katanin is degraded by the proteasome after meiosis
followed from studies of a mutant called rfl-1 (for membrane
ruffling) (Kurz et al., 2002
).
In rfl-1() mutant embryos, as in cul-3()
mutants, mitotic microtubules are unstable because of the persistence of
MEI-1/katanin after meiosis, and extra MEL-26-dependent membrane ingressions
appear during pronuclear migration and cytokinesis
(Kurz et al., 2002
;
Luke-Glaser et al., 2005
).
Positional cloning revealed that rfl-1 is the C. elegans
ortholog of UBA3, a S. cerevisiae gene that encodes one
subunit of the heterodimeric E1-activating enzyme for an ubiquitin-like
protein called Rub1p in yeast and NEDD8 in humans
(Kurz et al., 2002
) (see
Box 2). In contrast to
ubiquitin, NEDD8 neither forms chains on, nor triggers the proteasomal
degradation of, its cullin targets. Rather, cullin modification by a single
NEDD8 moiety is thought to promote E3 assembly by removing from the cullin an
assembly inhibitor called Cand1/TIP120A
(Goldenberg et al., 2004
;
Liu et al., 2002
;
Oshikawa et al., 2003
;
Zheng et al., 2002a
) (see
Box 2). Cullin neddylation may
also assist Rbx1 in recruiting ubiquitin E2-conjugating enzymes to the E3
ligase (Kawakami et al.,
2001
).
| Box 2. The Nedd8 conjugation pathway
Nedd8 and ubiquitin are about 57% identical in amino acid sequence, and
Nedd8 is transferred to target proteins by E1 and E2 enzymes related to the E1
and E2s that mediate ubiquitin conjugation
(Liakopoulos et al., 1998
|
|
|
|
A screen for additional factors required for katanin degradation in C.
elegans recently identified a new and widely conserved Nedd8-conjugation
pathway component called DCN-1 (for defective in cullin neddylation)
(Kurz et al., 2005
). RNAi
depletion of DCN-1 in early embryos reduces CUL-3 neddylation, and katanin
persists into mitosis to cause the same cytoskeletal defects observed in
rfl-1() and cul-3() mutant embryos. The S.
cerevisiae ortholog Dcn1p is also required for cullin neddylation
(Kurz et al., 2005
). The
requirement for DCN-1/Dcn1p in neddylation appears to be direct, as Dcn1p
binds to the C terminus of the cullin Cdc53p, near the neddylation site, and
DCN-1 also directly binds Nedd8. Moreover, S. cerevisiae Dcn1p can
increase the rate of neddylation in vitro
(Kurz et al., 2005
). Thus,
DCN-1/Dcn1p has been proposed to function as an E3 ligase for Nedd8 (see
Box 2), possibly by cooperating
with the RING protein Rbx1, which also promotes cullin neddylation
(Morimoto et al., 2003
).
Deneddylation and cullin function
Cullin de-neddylation, mediated by a protein complex called the COP9
signalosome (Lyapina et al.,
2001
; Schwechheimer et al.,
2001
), is also required for CUL-3MEL-26 E3 ligase
function (Pintard et al.,
2003a
) (see Box 2).
The signalosome consists of eight subunits (CSN1 through CSN8) in other
organisms, but only six subunits (CSN1 through CSN6) have been identified in
C. elegans (Pintard et al.,
2003a
). The inactivation of any one C. elegans subunit by
RNAi increases the steady-state levels of Nedd8-modified CUL-3, and prevents
the degradation of MEI-1/katanin after meiosis
(Pintard et al., 2003a
). Thus,
both hypo- and hyper-neddylation of CUL-3 result in a loss of ligase
function.
Interestingly, the lethality caused by a partial reduction of CUL-3
neddylation can be rescued by simultaneously reducing COP9 signalosome
function (Pintard et al.,
2003a
). Thus, at least for the CUL-3MEL-26 E3 ligase, a
balance of neddylation and de-neddylation is required for the optimal function
of this ligase. One interpretation of this finding is that cycles of
neddylation and deneddylation may promote E3 function. For example, neddylated
CUL-3 might recruit an ubiquitin-charged E2-conjugating enzyme to the E3
ligase, with de-neddylation subsequently promoting expulsion of the spent E2.
Alternatively, a Nedd8-modified E3 ligase might undergo multiple rounds of
substrate ubiquitination, with de-neddylation promoting the exchange of a
poly-ubiquitinated substrate for a new substrate molecule.
A recent study supports a more static model for neddylation and
deneddylation (Wee et al.,
2005
). In this model, Nedd8 modification of the cullin is required
for ligase assembly and activation. Once a substrate has been ubiquitinated,
cullin de-neddylation shuts down the ligase to prevent ubiquitination and
degradation of the substrate-specific adaptor. Consistent with this model,
some BTB substrate adaptors are rapidly ubiquitinated and degraded in S.
pombe de-neddylation defective mutants, preventing degradation of the
corresponding substrates (Wee et al.,
2005
). However, not all adaptors exhibit this property
(Wee et al., 2005
), and
whether MEL-26 is degraded in signalosome-defective mutants is not known. In
vitro studies of CUL-3 ligase assembly and function will be required to
distinguish between these cycling and static models.
The discovery and analysis of the CUL-3MEL-26 E3 ligase in C. elegans has provided mechanistic insight into the regulation of microtubule stability and actomyosin contractility during the transition from oogenesis to early embryogenesis. These studies also have provided substantial insight into conserved mechanisms that regulate ubiquitin-mediated proteolysis, highlighting the utility of C. elegans for studies of this fundamentally important regulatory system.
Ubiquitination and cell fate determination
The rapid development of the early C. elegans embryos is
characterized by a sequence of five asymmetric cell divisions that are largely
responsible for establishing the nematode body plan
(Sulston et al., 1983
)
(reviewed by Lyczak et al.,
2002
). These asymmetric cell divisions require proper positioning
of mitotic spindles, which depends in part on the destruction of katanin after
meiosis (see above). These early divisions also require the proper regulation
of cell polarity, with developmental determinants asymmetrically inherited by
daughter cells. Recent studies have implicated ubiquitin-dependent proteolysis
both in the initial establishment of cell polarity along the AP axis in the
one-cell C. elegans zygote, and in subsequent events that further
influence the asymmetric inheritance of cell fate determinants by early
embryonic cells.
The APC/C and axis specification
In addition to its requirements for progression through meiosis (see
above), loss of APC/C function in C. elegans can also result in a
failure to establish the anteroposterior (AP) body axis
(Wallenfang and Seydoux,
2000
; Rappleye et al.,
2002
) (see Fig. 4).
In wild-type embryos, the AP axis is specified by the position of the
sperm-donated pronucleus and its associated centrosomes, which become closely
apposed to the plasma membrane and specify the posterior pole
(Albertson, 1984
;
Goldstein and Hird, 1996
).
Axis specification does not require the sperm pronucleus
(Sadler and Shakes, 2000
), but
fails in centrosome maturation-defective mutants
(Hamill et al., 2002
;
O'Connell et al., 2000
;
Wallenfang and Seydoux,
2000
), and after laser ablation of the centrosome in wild-type
embryos (Cowan and Hyman,
2004
) (see Fig.
4A). The duration of the close apposition of the sperm pronucleus
with the cell cortex is substantially reduced in APC/C or separase mutants,
leading to suggestions that the APC/C is directly required for this close
apposition and thus for the specification of the posterior pole
(Rappleye et al., 2002
).
The arrest at metaphase of meiosis I in C. elegans APC/C mutants
frequently results not just in a loss of polarity but in a partial reversal of
the AP axis, and this reversal depends on the assembly of a meiotic spindle
(Wallenfang and Seydoux,
2000
). Thus, it appears that whereas the sperm-donated centrosomes
normally specify the posterior pole, in APC/C mutants the meiotic spindle,
which usually forms at the pole opposite the site of sperm entry (see
Fig. 2), can ectopically (but
only partially) specify a posterior pole. Indeed, even in wild-type embryos,
posterior-specific cortical proteins sometimes transiently accumulate near the
meiotic spindle, at what will ultimately become the anterior pole
(Boyd et al., 1996
;
Cuenca et al., 2003
). This
temporary reversal is often stabilized in APC/C mutants, presumably owing to
the persistence of the meiotic spindle and the failure of the sperm
pronucleus-associated asters to mature
(Wallenfang and Seydoux,
2000
). Apparently, the transient nature of the meiotic spindle,
and the subsequent maturation of the sperm-donated centrosomes, results in the
normal specification of a posterior pole in wild-type embryos (reviewed by
Schneider and Bowerman, 2003
;
Cowan and Hyman, 2004
).
|
CUL-2 and axis specification
Reducing CUL-2 function also results in a failure to properly establish the
AP body axis (Liu et al.,
2004
; Sonneville and
Gönczy, 2004
) (see Fig.
4C). In wild-type embryos, establishment of the AP axis by the
sperm-donated centrosomes (see above) results in: (1) the cortical actomyosin
cytoskeleton becoming enriched anteriorly; (2) the cortical polarity
regulators PAR-3, PAR-6 and PKC-3 becoming restricted to the anterior pole;
and (3) PAR-1 and PAR-2 occupying the posterior cortex (reviewed by
Schneider and Bowerman, 2003
).
The polarized distribution of these cortical regulators then establishes
subsequent asymmetries in the distributions of cytoplasmic cell-fate
determinants. These include multiple proteins with CCCH-type zinc-finger
domains: the nearly identical proteins MEX-5 and MEX-6 are restricted to the
anterior, while the germline determinant PIE-1 is restricted to the posterior
cytoplasm (reviewed by Lyczak et al.,
2002
) (see also Fig.
4). The polarized distribution of these determinants is required
for the daughters of the first mitotic division to produce distinct patterns
of cell fate as embryogenesis proceeds.
As in APC/C mutants, the AP axis is reversed in some
cul-2() and zyg-11() mutant embryos, such that
cortical PAR-2 becomes localized to the pole opposite the sperm pronucleus
(Liu et al., 2004
;
Sonneville and Gönczy,
2004
) (see Fig.
4C). Sometimes this reversal is maintained throughout the first
mitotic cell cycle. In other mutant embryos, a wild-type PAR-2 distribution is
established after the initial reversal, while in still other mutant embryos
cortical PAR-2 localization and polarity are lost entirely
(Sonneville and Gönczy,
2004
).
The persistence of the meiotic spindle in cul-2() and
zyg-11() mutants may be indirectly responsible for the AP axis
defects, as in APC/C mutants (Wallenfang
and Seydoux, 2000
) (see above). However, the polarity requirements
for CUL-2 and ZYG-11 may be more direct, as PAR-2 still localizes abnormally
in cul-2() and zyg-11() mutant embryos, even
after depleting
- or ß-tubulin to disrupt meiotic spindle assembly
(Liu et al., 2004
;
Sonneville and Gönczy,
2004
). Furthermore, RNAi-mediated depletion of the cyclin CYB-3,
like CUL-2 or ZYG-11 depletion, also delays meiotic spindle disassembly but
does not cause polarity reversals
(Sonneville and Gönczy,
2004
). Conversely, entirely bypassing meiosis and hence the
meiotic delays in zyg-11() mutant embryos, by depletion of the
C. elegans Cdc2 homolog NCC-1, does not prevent axis reversal
(Sonneville and Gönczy,
2004
). Finally, depletion of CUL-2 or ZYG-11 in APC/C mutants
results in an arrest during metaphase of meiosis I, but the polarity defects
resemble those in cul-2() and zyg-11() mutants
(Sonneville and Gönczy,
2004
). These results suggest that a CUL-2 E3 ligase may be
directly required for the proper establishment of the AP body axis.
Nevertheless, it remains possible that the meiotic defects in
cul-2() or zyg-11() mutants delay centrosome
maturation, and thereby favor reversed polarity. An examination of centrosome
maturation in cul-2 () and zyg-11() mutants is
needed to rule out an indirect effect. Ultimately, the identification of
ubiquitin substrate(s) will be required to conclude that CUL-2 and ZYG-11
function directly in the establishment of AP polarity.
CUL-2 and cytoplasmic polarity
In addition to possibly influencing the initiation of cortical polarity,
CUL-2 is required later in development to polarize the cytoplasm after the
asymmetric division of the one-cell zygote
(DeRenzo et al., 2003
) (see
Fig. 4). The posterior daughter
of this first division inherits higher levels of PIE-1 and two additional
cytoplasmic CCCH-type zinc finger proteins called POS-1 and MEX-1
(Guedes and Priess, 1997
;
Mello et al., 1996
;
Tabara et al., 1999
). The
anterior daughter inherits higher levels of MEX-5 and MEX-6
(Schubert et al., 2000
).
Subsequently, all five proteins are degraded in the anterior daughter and its
descendants. Residual PIE-1, POS-1 and MEX-1 are degraded more rapidly, while
MEX-5 and MEX-6 are degraded more slowly
(DeRenzo et al., 2003
;
Reese et al., 2000
). In each
of these proteins, one of their two CCCH-type zinc fingers is required and
sufficient for degradation (DeRenzo et
al., 2003
). Furthermore, the SOCS box protein ZIF-1 (zinc-finger
interacting factor 1) binds specifically to the zinc-finger in each protein,
and is required for their degradation
(DeRenzo et al., 2003
). ZIF-1
also interacts with ELC-1, suggesting that somatic degradation of CCCH-finger
proteins requires the action of a CUL-2ZIF-1 ligase, with ZIF-1
being the substrate-specific adaptor
(DeRenzo et al., 2003
).
Consistent with this conclusion, partial RNAi depletions of CUL-2, RBX-1 and
the ubiquitin-conjugating enzyme UBC-5 also results in a failure to degrade
PIE-1, POS-1, MEX-1, MEX-5 and MEX-6 in the anterior embryo
(DeRenzo et al., 2003
).
Although CUL-2, ZYG-11 and ZIF-1 are required to degrade the CCCH-finger
proteins well after the first cell division, they are not required for the
polarized distributions of these proteins that are observed in the cytoplasm
just prior to this asymmetric division
(DeRenzo et al., 2003
). Thus,
at least two mechanisms appear to generate a polarized cytoplasmic
distribution of these embryonic determinants. One unknown mechanism appears to
move proteins posteriorly prior to division, while ubiquitin-mediated
proteolysis degrades any posterior determinants that remain in the anterior
daughter.
Curiously, this putative CUL-2ZIF-1 E3 ligase requires MEX-5 and
MEX-6 to be functional. In mutant embryos lacking both of these redundant
proteins, the ZIF-1-dependent degradation of POS-1, MEX-1 and PIE-1 is
inhibited (DeRenzo et al.,
2003
). Thus, it appears that MEX-5 and MEX-6 are activators of the
CUL-2ZIF-1 ligase, as well as being its substrates. Regulation of
the ligase by these two proteins may explain why CCCH-finger proteins are
stabilized in the posterior daughter, where MEX-5 and MEX-6 levels may be too
low to activate the CUL-2ZIF-1 ligase.
Temporal and spatial regulation of protein degradation
It is clear that multiple ubiquitin E3 ligases operate during early
embryogenesis in C. elegans. It is less clear how the ubiquitin
machinery is activated at the right time and place. The recent identification
of the DYRK (dual-specificity YAK1-related kinase) kinase called MBK-2
provides important insights into the regulation of these early proteolytic
events. MBK-2 is required both for the CUL-3MEL-26 E3 ligase to
degrade katanin after meiosis, and for the CUL-2ZIF-1 ligase to
degrade PIE-1 after the first asymmetric division of the zygote
(Pang et al., 2004
;
Pellettieri et al., 2003
;
Quintin et al., 2003
). The
cell polarity defects occur independently of katanin regulation, as
mbk-2(); mei-1() double mutants do not exhibit the
microtubule stability defects observed in mbk-2() single
mutants, but still fail to degrade PIE-1 properly
(Pang et al., 2004
;
Quintin et al., 2003
). Earlier
steps in axis formation appear normal in mbk-2() mutant
embryos: the cortical PAR proteins polarize normally, and MEX-5 and MEX-6
still localize to the anterior (Pang et
al., 2004
; Pellettieri et al.,
2003
; Quintin et al.,
2003
).
Substrate phosphorylation often is a pre-requisite for recognition by an E3
ligase (Ang and Harper, 2004
).
Consistent with MBK-2 playing such a role, MEI-1/katanin contains an MBK-2
phosphorylation site within its PEST motif and MBK-2 phosphorylates MEI-1 in
vitro (Stitzel et al., 2006
).
Furthermore, a mutant MEI-1 protein with an alanine substitution at the MBK-2
phosphorylation site is no longer degraded after meiosis, and a
phospho-specific MEI-1 antibody detects high levels of MBK-2-dependent
phosphorylation only after the completion of meiosis
(Stitzel et al., 2006
). Thus,
MEI-1 phosphorylation by MBK-2 may provide the temporal trigger for degrading
katanin after meiosis, although it remains to be determined if phosphorylation
promotes MEI-1 recognition by the CUL-3MEL-26 E3 ligase.
Another target of MBK-2 is the oocyte maturation factor OMA-1. Remarkably,
OMA-1 also is a CCCH-type zinc-finger protein that contains an MBK-2
phosphorylation site in a PEST motif, and MBK-2 phosphorylates OMA-1 in vitro
and in vivo (Nishi and Lin,
2005
; Stitzel et al.,
2006
). Normally, OMA-1 functions redundantly with the almost
identical protein OMA-2 during oocyte maturation, and both are degraded during
the first mitotic division in an ubiquitin-dependent manner by an unknown
ligase (Detwiler et al., 2001
;
Shimada et al., 2002
;
Shirayama et al., 2006
). Like
MEI-1, OMA-1 degradation also requires phosphorylation by MBK-2
(Nishi and Lin, 2005
;
Shirayama et al., 2006
;
Stitzel et al., 2006
). A
gain-of-function OMA-1 mutant that is resistant to degradation persists after
meiosis and interferes with the degradation of PIE-1 and other cell fate
determinants (Lin, 2003
).
Thus, the failure to degrade developmental determinants in
mbk-2() mutant embryos may be a secondary consequence of OMA-1
stabilization (Lin, 2003
;
Shirayama et al., 2006
).
Nevertheless, MBK-2-dependent phosphorylation is required for at least two
independent degradation events: MEI-1 after meiosis and OMA-1 during the first
mitotic division.
Recent studies indicate that the glycogen synthase kinase GSK-3 also is
required for OMA-1 degradation (Nishi and
Lin, 2005
; Shirayama et al.,
2006
). GSK-3 phosphorylates OMA-1 at a residue different from
MBK-2, OMA-1 phosphorylation by MBK-2 is required for GSK-3 to phosphorylate
OMA-1, and both phosphorylation events are required for OMA-1 degradation
(Nishi and Lin, 2005
). Thus,
MBK-2 may act as a priming kinase for GSK-3. Intriguingly, GSK-3 appears to be
specific for OMA-1 degradation, as no defects reminiscent of MEI-1
stabilization are seen in embryos lacking GSK-3
(Nishi and Lin, 2005
;
Schlesinger et al., 1999
). Two
additional kinases also are required, directly or indirectly, for OMA-1
degradation (Shirayama et al.,
2006
). It will be interesting to learn whether MEI-1 also requires
additional kinase(s) to be efficiently degraded. Although phosphorylation
clearly regulates proteasomal degradation in the early C. elegans
embryo, it remains to be determined how MBK-2 and GSK-3 act together to
achieve the timely degradation of their respective substrates. Intriguingly,
progression through meioisis, but not fertilization, is required for MBK-2
activation, suggesting that meiotic cell cycle regulators play a key role in
mediating the oocyte-to-embryo transition
(Stitzel et al., 2006
).
Conclusion
Recent studies of early embryogenesis in C. elegans have converged
to a remarkable degree on the discovery of ubiquitin E3 ligases that mediate
several different cell cycle and developmental transitions. Moreover, it seems
likely that still more ubiquitin ligases with essential roles remain to be
identified. For example, embryonic lethality ensues when RNAi is used to
deplete a HECT domain ubiquitin ligase
(Huang et al., 2000
), and the
cortical polarity regulator PAR-2 is itself a RING finger protein and thus
potentially an ubiquitin ligase. Understanding how these regulatory complexes
function should substantially advance our understanding of C. elegans
development, and contribute to a general understanding of E3 ligase function
and regulation. A key goal for future studies will be the identification of
substrates that are ubiquitinated and degraded, as most remain unknown or
unproven. Finally, it will be interesting to see if ubiquitin-mediated
proteolysis emerges as an important regulator of the cytoskeleton, cell
polarity and cell fate determination during the development of other
organisms.
ACKNOWLEDGMENTS
The authors thank Jane Alfred, Andy Golden, Edward Kipreos, Geraldine Seydoux and three reviewers for very helpful comments on this manuscript. T.K. is supported by a Marie-Curie Intra-European fellowship from the European Commission, and B.B. is supported by grants from the US National Institutes of Health.
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