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Figure 3


Fig. 3. Evolutionary conservation of the molecular machinery of autophagy. The initial formation of the autophagosome can be divided into distinct steps: (A) induction, (B) vesicle nucleation and (C) vesicle elongation. (A) In yeast, Tor controls the phosphorylation (P) state of Atg13, a protein required for autophagy. Inhibition of Tor causes the dephosphorylation of Atg13 and the subsequent formation of a complex containing Atg1, Atg13, Atg17 and several other proteins, which in turn induces autophagy. Orthologs of Atg13 and Atg1 have been identified in metazoans, but no ortholog to Atg17 has been identified. In metazoans, Tor similarly inhibits autophagy, but whether this is through an interaction between Atg1 and Atg13 or an equivalent protein to Atg17 is not known. (B) The vesicle nucleation step (the formation of the isolation membrane/phagophore) results from the activity of a phosphatidylinositol 3 kinase (PI3K/Vps34) complex, which localizes other pre-autophagosomal proteins to the phagophore. In mammals, Bcl2, Uvrag and Bif1 are part of this complex. Orthologs to all three proteins exist in Drosophila and C. elegans. (C) The vesicle expansion of the phagophore into an autophagosome results from the concerted action of two novel and highly conserved ubiquitin-like conjugation pathways, the Atg12 conjugation system (Atg12p, Atg5p and Atg16p), and the Atg8 lipidation system (Atg8, Atg3 and Atg7). These pathways function in mice; however, it is not known whether the same multimeric structures occur in all metazoans. E1, E1-like ubiquitin activating enzyme; E2, E2-like ubiquitin conjugating enzyme; G, glycine of Atg8; PE, phosphatidylethanolamine that gets covalently linked to Atg8.





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