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First published online 23 October 2008
doi: 10.1242/dev.022723
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1 Department of Animal Biology and School of Veterinary Medicine, University of
Pennsylvania, Philadelphia, PA 19104, USA.
2 The Scripps Research Institute, La Jolla, CA 92037, USA.
3 Florida Atlantic University, Boca Raton, FL 33431, USA.
4 Janelia Farm, Ashburn, VA 20147, USA.
5 Mari-Lowe Center for Comparative Oncology, School of Veterinary Medicine,
University of Pennsylvania, Philadelphia, PA 19104, USA.
* Author for correspondence (e-mail: akashina{at}vet.upenn.edu)
Accepted 6 October 2008
| SUMMARY |
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Key words: Protein arginylation, Heart development, Actin, Post-translational modifications, Myofibrils, Cardiac muscle
| INTRODUCTION |
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Ate1 knockout mice die between E12.5 and E17, with large
hemorrhages, impairment of embryonic angiogenesis, and severe heart defects
that include underdeveloped myocardium, septation defects [ventricular and
atrial septal defects (VSD and ASD)], and non-separation of the aorta and
pulmonary artery [persistent truncus arteriosus (PTA)]
(Kwon et al., 2002
). The
underlying molecular mechanisms and cell lineage(s) responsible for these
defects are unknown. It has been hypothesized that some, or all, of these
defects might be due to impaired embryonic cell migration during heart
formation. VSD, ASD and PTA defects are often observed in mice with knockout
of genes that affect the migration of cells of the neural crest lineage
(Gitler et al., 2002
) and cell
adhesion (Conti et al., 2004
;
George et al., 1997
;
George et al., 1993
;
Tullio et al., 1997
). Cells
derived from Ate1 knockout embryos display severe defects in lamella
formation that result in impairment of directional migration along the
substrate, linked to arginylation of beta actin, a ubiquitously expressed
non-muscle actin isoform that plays a crucial role in lamella formation and
non-muscle cell locomotion (Karakozova et
al., 2006
). However, whether the heart defects seen in
Ate1 knockout embryos are linked to impairments in cell migration
during development, or whether additional cell-autonomous changes in the cells
composing the heart contribute to the Ate1 knockout phenotype,
remains to be addressed.
It has recently been found that a number of proteins in embryonic and adult
mouse tissues are arginylated (Wong et
al., 2007
). Among these, a prominent arginylation substrate is
alpha cardiac actin (also known as cardiac alpha actin, Actc1), the major
component of the myofibrils in the cardiac muscle, the arginylation of which
is likely to affect myofibril development and function. It is likely that
impairment of this arginylation in the Ate1 knockout mouse would lead
to defects in myofibril development that would be evident upon comparison of
the hearts of wild-type and Ate1 knockout embryos, shedding light on
the molecular role of arginylation in heart development and myofibril
function.
To address the question of whether Ate1 knockout results in cell-autonomous changes in cardiac myocytes and whether arginylation plays a role in myofibril development and function, we characterized embryonic actin by gel fractionation and mass spectrometry and found that during development, alpha cardiac actin exists in a highly arginylated state and contains a total of four arginylated sites, including two that were previously unknown. The four added arginines are likely to act in conjunction within the folded actin monomer to modulate actin polymerization and co-assembly with other myofibril proteins. Analysis of myofibril development at early stages of heart development, as well as between E12.5 and E14.5 when the phenotypic changes in Ate1 knockout embryos become obvious, showed that lack of arginylation results in delayed myofibril formation and various structural defects in the myofibrils that suggest impairment in cardiac contractility. Studies of cardiac myocytes in culture support these conclusions and suggest that arginylation plays a key role in the functioning of cardiac myocytes. These results demonstrate cell-autonomous changes in cardiac myocytes that develop in response to Ate1 knockout and suggest a key role of actin arginylation in the development and function of cardiac muscle in vivo.
| MATERIALS AND METHODS |
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Actin fractionation and analysis
For two-dimensional gel analysis, whole E12.5 embryonic hearts were washed
in PBS, flash frozen in liquid nitrogen, supplemented with 50 µl of
2x SDS sample buffer [5% SDS, 5% β-mercaptoethanol, 10% glycerol,
60 mM Tris (pH 6.8) (Burgess-Cassler et
al., 1989
)], homogenized by grinding and pipetting and boiled for
10 minutes for the subsequent electrophoretic fractionation. Complete
dissolution of proteins was confirmed by centrifugation of the samples at
13,000 g for 15 minutes and visual confirmation that no pellet
was present in the tube. Two-dimensional gel electrophoresis was performed by
Kendrick Laboratories
(www.kendricklabs.com)
with SDS-boiled samples using carrier ampholines with isoelectrofocusing tube
gels that enable isoelectrofocusing of samples prepared with SDS buffer as
described (Anderson and Anderson,
1978
). Spots corresponding to individual actin isoforms were
excised from dried Coomassie-stained gels and analyzed by mass spectrometry as
described (Karakozova et al.,
2006
; Wong et al.,
2007
) for protein identification and mapping of the arginylation
sites.
For the analysis of the protein composition of the myofibrils (see Fig. S2
in the supplementary material), myofibril isolation was performed as
previously described (Meng et al.,
1996
). In brief, individual E12.5 embryonic hearts were
homogenized in 20 volumes (per weight) of buffer I (39 mM sodium borate, 35 mM
KCl, 5 mM EGTA, 1 mM DTT, pH 7.1) and centrifuged at 1500 g
for 12 minutes. The pellets were resuspended in 20 volumes of buffer II (39 mM
sodium borate, 25 mM KCl, 1 mM DTT, pH 7.1) and centrifuged at 1500
g for 12 minutes. The pellets were further re-extracted for 30
minutes with Triton X-100 buffer (39 mM sodium borate, 25 mM KCl, 1 mM DTT, 1%
Triton X-100, pH 7.1) and centrifuged at 1500 g for 12
minutes, followed by a wash with 20 volumes of suspension buffer (10 mM Tris,
100 mM KCl, 1 mM DTT, pH 7.1) and centrifugation at 1500 g for
30 minutes. The final pellets containing myofibrils were resuspended in 15
µl of 1x sample buffer and boiled for 15 minutes before loading on an
SDS-PAGE gel.
Gel scanning and densitometry for determination of the percentages of arginylated actin and the myosin to actin ratio in the myofibril preparations were performed on inverted black and white images of gels, as shown in Fig. 1A, using the `gray level' quantification in the Metamorph imaging software (Molecular Devices).
Electron microscopy
Whole mouse embryos at E9.5 and hearts excised from E12.5 and E14.5 mouse
embryos were washed in PBS and fixed in 2.5% glutaraldehyde and 2%
paraformaldehyde in buffer C (0.1 M sodium cacodylate, pH 7.4) overnight at
4°C, followed by two 10-minute washes in buffer C and post-fixation in 2%
osmium tetroxide in buffer C. For staining, fixed embryos or hearts were
washed twice for 10 minutes each in buffer C, once for 10 minutes in distilled
water, incubated 1 hour at room temperature in a 2% aqueous solution of uranyl
acetate and then washed twice for 10 minutes each in distilled water. For
embedding, stained embryos or hearts were dehydrated by incubation for 10
minutes each in 50%, 70%, 80%, 90% and 100% ethanol, followed by two 5-minute
incubations in propylene oxide (PO), overnight incubation in 1:1 PO:Epon
(Poly/Bed 812, Polysciences), and then 1 day in 100% Epon. Epon-embedded
embryos or hearts were kept for 2 days at 60°C for Epon polymerization,
sectioned, stained with 1% uranyl acetate in 50% methanol and with a 2% (w/v)
solution of bismuth subnitrite at 1:50 dilution, and then overlaid onto
Formvar-coated grids for electron microscopy. Four embryos at E9.5 and four
hearts at E12.5 (two wild-type and two knockout each) and six hearts at E14.5
(three wild-type and three knockout) were used for the measurements and
observations shown in Figs 2,
3,
4 and in Fig. S3 in the
supplementary material.
Cardiac myocyte derivation and beat measurements
For cardiac myocyte derivation, whole hearts from E12.5 embryos were washed
with warm PBS, placed into 200 µl of prewarmed 1% trypsin in PBS and
incubated at 37°C for
5 minutes. After digestion, heart tissue was
gently pipetted up and down until the large aggregates were broken apart, the
cell suspension was diluted with 1 ml of DMEM:F10 culture medium supplemented
with 10% FBS, centrifuged for 5 minutes at
100 g,
resuspended in
2 ml of the same medium, and plated onto 3.5-cm
collagen-coated glass-bottom dishes (Matek). Cells were incubated overnight in
culture for attachment and spreading.
For myocyte beat measurements, time-lapse videos of individual myocytes or islands were obtained over 1 minute at half-second intervals (120 frames) using phase-contrast 10x, 20x or 40x objectives and an Orca AG digital camera (Hamamatsu). In each video, beats of individual cells or isolated islands were measured by selecting a 10x10 pixel region in the area of the cell where the gray value (image intensity) displayed obvious changes during each contraction (as shown in Fig. 5C), and total gray value over time in this region was measured using Metamorph. Time intervals between the centers of gray value peaks, which were determined automatically after smoothing the baseline and scaling up the peaks, were used for frequency diagrams and for calculation of means and ratios as shown in Fig. 5. For measurement of calcium changes during beats, the medium in the dishes with cultured myocytes was supplemented with 2.5 µM cell-permeable Fluo-4 fluorescent calcium indicator dye (Invitrogen), followed by a 30-minute incubation for dye loading. Individual cells and islands were then placed into fresh medium and imaged by phase-contrast time-lapse over 25 seconds, acquired at four frames per second, followed by imaging of the same field in the fluorescent channel for the same time interval. Calcium change periodicity was measured by changes in light intensity (gray levels) in a 10x10 pixel region located in the center of a beating cell, and intervals between peaks were determined and compared with those obtained during phase-contrast imaging of the same cells for the correlation plot shown in Fig. 5D.
| RESULTS |
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, β,
) are over 99% identical to each other, with
small variations in amino acid composition that lead to shifts in isoelectric
point (Otey et al., 1987
|
,
Fig. 1A), which was
significantly shifted to the more acidic end of the range (left), consistent
with the loss of several positive charges. Since Arg is highly positively
charged, and addition of Arg to proteins is expected to result in a shift in
the isoelectric point towards the basic range, the gel shift observed between
wild-type and Ate1 knockout hearts is consistent with the addition of
several Arg residues to the wild-type actin molecule. To confirm this, we
analyzed the major actin spots, excised from the gels similar to those shown
in Fig. 1A, by mass
spectrometry, using a high accuracy LTQ-Orbitrap MS instrument and a database
search algorithm to look for the addition of an extra Arg to the N-terminus of
the peptides (Wong et al.,
2007
Mapping of all four of the identified arginylated sites onto the actin 3D
structure [PDB identifier 1J6Z (Otterbein
et al., 2001
)] revealed that all these sites are accessible on the
surface of the folded subunit, but some sites might not be accessible after
polymerization (the two sites on the top), suggesting that modification of
these sites could occur after subunit folding but before incorporation into
the polymer. The sites are located pairwise on the actin surface, with two
arginylated residues directly facing each other in the folded structure
(Fig. 1B, in pink within the
blue chain of the actin backbone). Insertion of Arg into these positions would
be predicted to affect the molecular structure of the actin monomer, its
polymerization properties and interaction with other proteins in the
myofibril.
Estimation by gel densitometry of the arginylation-dependent gel shifts of the alpha cardiac actin shown in Fig. 1A suggests that as much as 40% of the total embryonic heart actin, and 50% of the alpha actin, is arginylated in vivo. Thus, alpha cardiac actin in embryonic hearts exists in a highly arginylated state and Ate1 knockout results in the abolishment of actin arginylation, which is expected to result in significant structural and functional changes in the actin molecule.
Arginylation regulates myofibril assembly, structure and continuity throughout the heart
To test whether arginylation knockout results in defects in myofibril
structure and/or assembly at the onset and during the progression of the
phenotypic changes in Ate1-/- embryos, we analyzed
sections of fixed hearts derived from E12.5 and E14.5 wild-type and knockout
littermate embryos by electron microscopy. These stages were chosen because at
E12.5, Ate1-/- embryos appear to be phenotypically normal
such that only the most significant early myofibril defects, if any, are
expected to be seen, whereas at E14.5, most knockout embryos look grossly
abnormal and some of them start to die, so any myofibril defects in response
to the Ate1 knockout would be highly prominent at this point.
Examination of the heart structure at lower magnification (x250, not
shown) confirmed that Ate1 knockout hearts, consistent with
previously reported observations, had thin walls owing to the reduced size of
the compact zone of the myocardium (Kwon
et al., 2002
). Higher magnification views of the large areas of
the heart (x2500, Fig. 2)
revealed significant structural changes in Ate1 knockout hearts
compared with their wild-type counterparts. In wild-type hearts, the
development of highly organized, continuous myofibrils progressed robustly
from E12.5 to E14.5, whereas in the Ate1 knockout, this development
appeared to be delayed, resulting in scarce, disorganized myofibrils, the
continuity of which could not be traced through multiple myocytes
(Fig. 2, right). The prominence
and severity of these defects varied between individual embryos and across the
heart areas analyzed, but all the hearts used in this analysis displayed
similar trends. In the most severe cases, as observed in hearts taken from
E14.5 embryos with prominent phenotypic changes [reduced size, paleness and
hemorrhages as described by Kwon et al.
(Kwon et al., 2002
)], the
myofibril structure and connections between the myocytes were disrupted,
suggesting that such hearts would be unlikely to function normally. Overall,
the observed changes suggested that Ate1 knockout resulted in the
delayed development and the disorganization of the myofibrils and disruption
of their continuity between interconnected cells, all of which are predicted
to affect contractility within the heart muscle.
|
We next analyzed higher magnification images of the sarcomeres and intercalated disks in wild-type and mutant hearts (Figs 3 and 4). Several structural features of the myofibrils and intercalated disks were evaluated quantitatively, including sarcomere length and Z-band thickness (as measures of sarcomere structure, Fig. 3), the angle of myofibrils and their component filaments at intercalated disks (a measure of myofibril continuity throughout the heart), and cell-cell distance at intercalated disks (a measure of heart muscle integrity) (Fig. 4). In addition, the general appearance of the myofibrils was evaluated. Only the fully developed, structurally distinct myofibrils were evaluated in both conditions, so the analysis presented in Figs 3 and 4 does not reflect any measure of the rate of myofibril development, which was difficult to evaluate owing to possible variation in the area of the heart muscle that was used for sectioning in each heart.
Several prominent defects were observed in the myofibrils with the progression of Ate1 knockout-related phenotypic changes. At E12.5, most of the sarcomeres and Z-bands in fully developed myofibrils appeared normal, whereas at E14.5 the hearts with more severe defects showed sarcomere collapse (Fig. 3), with a progressive decrease in the length of individual sarcomeres and diffusion of the Z-bands in a manner that suggested disconnection of the Z-bands from the myofibrils. Some of the myofibrils became wavy and uneven, with prominent loss of Z-bands and fraying of the filaments out of the sarcomeres (Fig. 3D, bottom image). A variety of other structural abnormalities were observed, including myofibril branching at Z-bands, asymmetric sarcomeres with a different density of filaments on the two sides of the same sarcomere (Fig. 3E), and patchy or missing Z-bands (not shown; also observed in the wild type, but more often seen in the knockout).
Defects were also seen at intercalated disks, which serve as the sites of connection of the myofibrils between neighboring myocytes and ensure myofibril continuity throughout the heart. First, in most of the observed cases, including E12.5 hearts in which other ultrastructural features were apparently normal, the filaments within a myofibril approached the intercalated disk at different angles, resulting in tapered (E12.5 and E14.5), frayed and/or disoriented (E14.5) or disconnected (i.e. missing myofibrils on one side of the intercalated disk, E14.5) morphology (Fig. 4E, top three images) that suggested structural and functional discontinuity of the myofibrils between myocytes. In more severe cases, disruption of the intercalated disks themselves was observed (Fig. 4E, bottom image). All these changes suggest contractility defects and disconnection between individual myocytes in the myocardium.
|
300 nm in the wild type and
200 nm
in the Ate1 knockout (see Fig. S3 in the supplementary material).
These results suggest that in addition to the ultrastructural changes in the
myofibrils seen at later stages, myofibril development is also delayed in
Ate1 knockout embryos. Thus, Ate1 knockout results in delayed myofibril development, changes in sarcomere structure and in a discontinuity of the myofibrils throughout the heart.
Arginylation regulates cardiac myocyte contractility in culture
To address the question of whether the observed myofibril defects result in
changes in the contractility of the cardiac myocytes, we isolated myocytes
from E12.5 wild-type and Ate1 knockout embryos and observed their
spontaneous contractility in a tissue culture dish. In both cultures, two
types of cells were present: flat, well-spread polarized fibroblasts, and less
well-spread, mostly hexagonally shaped myocytes that often formed small
islands with two or more cells clustering together. Most of the cells with
myocyte morphology exhibited spontaneous contractility during the first 2-3
days in culture (the time interval used for the analysis). Fewer myocytes
appeared to be beating in the knockout cultures, but this effect was not
quantified because of the lack of criteria for a formal quantitative
distinction between myocytes and non-myocyte cells in culture. After a few
days in culture, most of the Ate1 knockout myocytes ceased to beat,
whereas in the control cultures many more cells were still beating (suggesting
that the wild-type cells are `sturdier' in these culture conditions and/or
more capable of continuous beating), but because by that time the culture dish
was usually overgrown with fibroblasts and cells of the myocyte morphology
were difficult to identify, this effect was not quantified.
To measure the beating rates of individual myocytes and myocyte islands in culture, we made time-lapse movies of beating myocytes taken at half-second intervals over the course of 1 minute in both cultures during the first 2 days after isolation, and measured the light intensity changes in phase-contrast time-lapse images over time (for the normalized plots of gray level changes over time for individual wild-type and knockout cells or islands, see Figs S4 and S5 in the supplementary material). As this relatively low sampling rate might have precluded us from measuring the actual beating rate at higher frequencies [>60 beats per minute (bpm)], we also manually calculated the number of cells beating at high frequency, and the number of cells displaying visibly irregular beating patterns, i.e. variable intervals and strength between individual beats (Fig. 5 and see Figs S4 and S5 in the supplementary material).
|
To confirm that the physical beating frequency measured in our experiments
correlates with the changes in intracellular Ca2+, we measured
calcium waves (using Fluo-4 Ca2+ vital dye) and physical beats
(using light intensity measurements of phase-contrast images) in the same
cells and/or islands and plotted the correlation between the two measurements
(Fig. 5D, see Fig. S6 in the
supplementary material for the original curves). We found that in most
wild-type and knockout cells, beats and calcium waves showed a good
correlation, suggesting that the changes in the beating frequency of the
knockout cells, despite their origin in structural defects in the myofibrils,
were still tied into calcium-dependent regulation. To minimize the UV exposure
for live cells in culture, these measurements were performed at a higher
sampling rate (four frames per second over 25 seconds), resulting in an
elevated average bpm for both cell types (not shown) and in an elevated ratio
of beating frequency between wild type and knockout, as compared with those
measured in the previous set of experiments
(Fig. 5A and Fig. S6 in the
supplementary material). This difference suggested that the earlier
measurements, taken at a lower sampling rate, might not have reflected the
real beating frequencies of the cultured myocytes. The rates detected in our
studies are similar to those reported by other researchers studying myocyte
beating in culture, but because mouse hearts in vivo beat at a much higher
frequency [over 300 bpm (Mai et al.,
2004
)], it is possible that sampling rates in time-lapse imaging
of cultured cells preclude accurate measurement of the beating rate. For this
reason, actual bpm values were not used in our analysis, and only the bpm
ratios between wild-type and knockout cultures are shown.
|
| DISCUSSION |
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We have previously shown that two actin isoforms, beta and alpha cardiac,
are arginylated in vivo (Karakozova et
al., 2006
; Wong et al.,
2007
), and both isoforms are present in the developing heart. In
this study, we identify two new sites of arginylation on alpha cardiac actin
and provide a possible functional correlation between alpha actin arginylation
and myofibril development and function. Our data suggest that an extremely
high percentage of cardiac actin (
50%) is arginylated, supporting the
proposal that actin arginylation is crucial for myofibril integrity. It has
been shown previously that substitution of alpha cardiac actin with the gamma
enteric muscle isoform (presumed to be non-arginylated) leads to altered
mechanochemical properties of myofibrils isolated by detergent extraction of
the heart muscle (Martin et al.,
2002
). Although gamma enteric smooth muscle actin could,
hypothetically, become partially arginylated during this substitution, this
finding is, overall, consistent with our data indicating that the actin
arginylation state and the N-terminal actin sequence are important for
myofibril function. Furthermore, our data suggest a direct role of
arginylation in the regulation of actin function during myofibril assembly and
heart development.
Two of the four arginylated sites were identified in actin polypeptides of intact size isolated from an SDS-PAGE gel, suggesting that these modifications exist within the intact, folded actin molecule that maintains its integrity during SDS-PAGE, and that they do not result in protein degradation or disassembly. The chemistry and enzymology of this reaction remain to be studied. The position of the arginylation sites in the actin 3D structure (Fig. 1B) suggests that arginylation of one, or more, of these sites would significantly alter actin polymerization properties and its ability to associate with other subunits during polymerization. Since the arginylated (Ate1-positive) state of actin is the wild-type state, it is logical to assume that the absence of arginylation would result in the reduction of the ability of actin monomers to polymerize and/or interact with other actin-binding proteins, probably by the abolishment of Arg residues from key positions within the molecule.
|
The timing of the myofibril defects seen in our study is consistent with
the timing of other phenotypic changes in Ate1 knockout mice that
become apparent after E12.5, closer to E14.5. Whereas some of the defects
described in the current work (disruption of intercalated disks) might
constitute secondary defects resulting from the loss of heart integrity,
possibly preceding death, others (myofibril disorganization, sarcomere
collapse and Z-band diffusion) are likely to be primary defects due to the
lack of arginylation of the major structural components of the myofibrils.
Since a prominent peak of Ate1 expression is observed at E8-9, after
which Ate1 expression declines, and as the phenotypic changes take
another 3-4 days to develop (Kwon et al.,
2002
), it is conceivable that E8-9 mark the time in development
when a substantial amount of myofibril proteins are arginylated and stocked up
for further use. Actin is a good candidate for this type of regulation because
it is a highly abundant, highly stable protein and a major structural
component of the myofibrils that, as we have shown, is arginylated in
embryogenesis to a significant extent. However, other proteins might also
undergo similar regulation.
Among the current models of myofibril assembly during development, the
favored model suggests their formation from premyofibrils by association of
cytoplasmic actin filaments into minisarcomeres that later align into nascent
myofibrils and further mature into myofibrils
(LoRusso et al., 1997
;
Rhee et al., 1994
;
Sanger et al., 2000
;
Sanger et al., 2005
). Lack of
arginylation of actin and other myofibril components could conceivably affect
one or more stages in this process, by slowing the polymerization of the
initial actin filaments, enforcing their abnormal aggregation instead of
normal association, or affecting their interaction with other key proteins
that form the core of the myofibril structure (myosin II, capZ, alpha actinin,
troponins, tropomyosin and others). In addition to alpha cardiac actin, our
previous work showed that talin (which participates in the membrane
association of premyofibril complexes), as well as spectrin and filamin (which
are generally responsible for the assembly of actin-containing structures),
are also targets for arginylation in vivo
(Wong et al., 2007
). We
believe that a combination of these factors leads to a delay in myofibril
assembly (Fig. 6), resulting in
the formation of fewer myofibrils in the Ate1 knockout hearts than in
the control at the same embryonic stage. Since these myofibrils receive the
same contractility signals as in the wild-type heart (as follows from our
data, Fig. 5D), underdeveloped
myofibrils under stress are more likely to develop structural abnormalities,
eventually leading to their collapse and disintegration.
Our studies predict that cell-autonomous regulation of cardiac myocytes by arginylation is essential for myofibril stability, heart integrity and for the mechanical continuity of contraction throughout the myocardium. Changes in these processes constitute the underlying causes of congenital heart abnormalities and heart disease in humans. The study of their regulation by arginylation is an emerging field that promises to uncover new molecular mechanisms of heart development and function in normal physiology and disease.
Supplementary material
Supplementary material for this article is available at
http://dev.biologists.org/cgi/content/full/135/23/3881/DC1
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