|
|
|
|||
| Home Help Feedback Subscriptions Archive Search Table of Contents | ||||
First published online January 13, 2009
doi: 10.1242/10.1242/dev.027599
1 Department of Cell and Developmental Biology, Vanderbilt University Medical
Center, U-4200 MRBIII, 465 21st Avenue South, Nashville, TN 37232, USA.
2 Center for Biosystems Research, University of Maryland Biotechnology
Institute, 5115 Plant Sciences Building, College Park, MD 20742, USA.
* Author for correspondence (e-mail: laura.a.lee{at}vanderbilt.edu)
Accepted 25 November 2008
| SUMMARY |
|---|
|
|
|---|
Key words: Drosophila, Embryogenesis, Cell cycle, Mitosis, DNA checkpoint, E3 ubiquitin ligase
| INTRODUCTION |
|---|
|
|
|---|
Research over the past decade has highlighted major roles for protein
ubiquitination in regulating cellular responses to DNA damage
(Harper and Elledge, 2007
).
This post-translational modification, which involves covalent linkage of one
or more ubiquitin molecules to another protein, regulates many fundamental
cellular processes (Pickart,
2001
). Ubiquitination may alter the fate of a protein in numerous
ways, such as targeting it for destruction by the 26S proteasome, changing its
subcellular location, or changing its protein-protein interactions.
Ubiquitination is a highly dynamic, multi-step process that requires three
components: ubiquitin-activating enzyme (E1), ubiquitin-conjugating enzyme (E2
or Ubc) and ubiquitin ligase (E3). E3s can be divided into two main classes:
HECT and RING domain-containing proteins. RING-type E3 ubiquitin ligases
(Freemont, 2000
;
Jackson et al., 2000
) contain
a specialized motif of 40 to 60 residues that binds two zinc atoms. Many
RING-type E3s bind to partnering E2 conjugating enzymes via their RING domains
(Passmore and Barford, 2004
).
Database searches of the Drosophila genome predict that it contains
one E1, 36 E2s and
130 E3s, which represents
40% of the
ubiquitination machinery in humans (Ditzel
and Meier, 2005
).
Significant insights into the roles of many cell-cycle regulators have come
from studying their functions in Drosophila. Drosophila is well
suited for studying cell-cycle regulation during the formation of a
multicellular organism, in large part because of its developmental use of cell
cycles that differ in structure from canonical G1-S-G2-M cycles and the
availability of genetic tools (Garcia et
al., 2007
; Lee and Orr-Weaver,
2003
). The first thirteen cell cycles of Drosophila
embryogenesis involve nearly synchronous nuclear divisions driven by
stockpiles of maternally expressed mRNA and protein
(Foe et al., 1993
). These
rapid cycles (
10 minutes in length) consist of oscillating S-M (DNA
replication-mitosis) phases without intervening gap phases or cytokinesis.
Minimal gene transcription occurs during this developmental stage, so cell
cycles are regulated by post-transcriptional mechanisms. At cycle 14, the
embryo cellularizes and initiates zygotic transcription at the midblastula
transition (MBT).
We report here the identification and characterization of a Drosophila maternal-effect lethal mutant that we have named `no poles' (nopo). Embryos from nopo females undergo mitotic arrest with acentrosomal, barrel-shaped spindles during syncytial divisions. Our results indicate that this arrest is secondary to the activation of a CHK2-mediated DNA checkpoint in early embryos. We show that NOPO, a predicted E3 ubiquitin ligase, interacts with an E2 component, BEN. ben females are sterile, producing embryos with nopo-like defects. We propose that BEN-UEV1A and NOPO function together as an E2-E3 complex required for genomic integrity during Drosophila embryogenesis.
| MATERIALS AND METHODS |
|---|
|
|
|---|
Quantification of egg hatch rates
Five newly eclosed females of the indicated genotype and five wild-type
males were incubated in yeast-pasted vials for two days and transferred to
egg-collection chambers at 25°C. Eggs were collected daily over five days
and scored for hatching
40 hours post-collection (>500 eggs per
genotype). Hatch rate is the ratio of hatched to total eggs expressed as a
percentage.
Genetic and molecular mapping of nopo
We screened a second chromosome deficiency collection for
non-complementation of female sterility of nopoZ1447.
Females carrying nopoZ1447 in trans to any of several
overlapping deficiencies (Df(2R)Pcl-11B, Df(2R)Pcl-XM82, Df(2R)Pcl-7B
or Df(2R)PC4) were sterile, placing nopo in the 55A1-C1
interval.
We further mapped nopoZ1447 by
P-element-induced male recombination
(Chen et al., 1998
) relative to
several insertions: lolalEP2169, Dgp-1BG00396,
CG5721EY03388, fjKG03419 and EP(2)1081.
Multiple independent recombinant chromosomes were recovered for each
P-element tested. We narrowed nopo to five candidates in the
55B11-12 region (Dgp-1, CG10916, CG5726, CG5140 and CG5721)
distal to Dgp-1BG00396 and proximal to
CG5721EY03388, as annotated on FlyBase
(Grumbling and Strelets,
2006
).
For each candidate gene, coding regions were sequenced as described
(Rickmyre et al., 2007
).
nopoZ1447 is a missense mutation in CG5140
causing a glutamic acid to lysine change at residue 11 of the predicted
protein. Df(2R)Exel7153, which deletes 15 genes in this region, was
subsequently found to uncover nopo. Putative nopo homologs
were identified using HomoloGene (release 56), and the RING domain of NOPO was
identified using ScanProsite.
Generation of the nopo-null allele
A nopo-null allele was generated by imprecise excision of
P-element EYG5845. The 771-bp deletion
nopoExc142 lacks part of the 5'-UTR and exons
encoding residues 1-181.
cDNA clones
cDNA encoding NOPO, BEN and UEV1A (GH03577, LD24448 and LD28904,
respectively) were from the Drosophila Gene Collection. Human
TRIP cDNA (ID 2821007) was from Open Biosystems.
Transgenesis
A 3.8-kb genomic fragment containing CG5140 and flanking regions
(Fig. 2A) was PCR-amplified
from BAC clone BACR15G20 (Drosophila Genomics Resource Center) and
subcloned into pCaSpeR4. A transgenic line carrying pCaSpeR4-CG5140
was generated by P-element-mediated transformation via embryo
injection (Rubin and Spradling,
1982
).
Embryo immunostaining and microscopy
Methods for fixation, staining and fluorescence microscopy of embryos
(1.5-2.5 hours unless otherwise indicated) and live-image analysis were
previously described (Rickmyre et al.,
2007
). P-values for live-image data were obtained using a
two-tailed, unpaired Student's t-test.
NOPO polyclonal antibodies
A fusion consisting of an N-terminal MBP tag and C-terminal NOPO was used
to generate anti-NOPO antibodies. DNA encoding C-terminal NOPO (residues 224
to 435) was PCR amplified and subcloned into pMAL (New England Biolabs).
MBP-C-NOPO was produced in bacteria, purified using amylose resin, and
injected into guinea pigs (Covance).
Protein extracts and immunoblots
Protein extracts were made by homogenizing embryos (1-2 hours) or dissected
tissues in urea sample buffer (Tang et
al., 1998
). Proteins were transferred to nitrocellulose for
immunoblotting using standard techniques. Antibodies used were as follows:
guinea pig anti-NOPO (1:1000), mouse anti-GAPDH (1:1000, Abcam), mouse
anti-
-tubulin (DM1a, 1:5000, Sigma), mouse anti-Cyclin B (F2F4, 1:200,
Developmental Studies Hybridoma Bank), and rabbit anti-pY15-CDK1 (1:1000,
Upstate).
Mammalian cell transfection, staining and microscopy
HeLa cells were maintained in Dulbecco's modified Eagle Medium (DMEM)
containing 10% fetal bovine serum. Plasmids encoding N-terminally tagged (eGFP
or mCherry) versions of NOPO, TRIP and BEN generated by subcloning into pCS2
were transfected into cells using Lipofectamine 2000 (Invitrogen) according to
the manufacturer's directions.
Cells were plated on fibronectin-coated coverslips 21 hours post-transfection and fixed three hours later. For direct fluorescence and centromere staining, cells were fixed for 20 minutes with 4% formaldehyde in CBS [10 mM MES (pH 6.1), 138 mM KCl, 3 mM MgCl2, 2 mM EGTA, 0.32 M sucrose]. For PCNA staining, cells were fixed for 5 minutes in 70% methanol/30% acetone. For Cyclin A staining, cells were fixed for 20 minutes in 3% paraformaldehyde/20% sucrose in phosphate-buffered saline. Cells were permeabilized for 10 minutes with 0.5% Triton X-100 in Tris-buffered saline. Primary antibodies used were as follows: human autoimmune (CREST) serum (1:1000, ImmunoVision), Cyclin A (H-432, 1:100, Santa Cruz Biotechnology), and PCNA (PC10, 1:200 Santa Cruz Biotechnology). To visualize actin, cells were stained for one hour with fluorescently conjugated phalloidin (1:1000, Invitrogen). Fluorescently conjugated secondary antibodies were used at a dilution of 1:5000. Slides were mounted in Vectashield with DAPI (Vector Laboratories). Images were acquired using a Nikon Eclipse 80i microscope equipped with a CoolSNAP ES camera (Photometrics) and Plan-Apo 60x objective. For experiments involving quantification, at least 400 cells per condition were scored.
Yeast two-hybrid assays
Yeast two-hybrid assays were performed as described
(James et al., 1996
). Plasmids
expressing wild-type and mutant versions of NOPO, BEN and UEV1A fused to the
Gal4 DNA-binding domain (`bait' vector pGBD-C) or Gal4-activation domain
(`prey' vector pGAD-C) were transformed into Saccharomyces cerevisiae
strain PJ69-4A. Cells containing both bait and prey plasmids were selected by
growth on synthetic complete (SC) plates lacking tryptophan and leucine, and
spotted onto SC plates lacking tryptophan, leucine and histidine; growth on
the latter (scored after two days at 30°C) indicates physical interaction
between the fusion proteins tested.
DNA damage-response assays
The sensitivity of nopo larvae to hydroxyurea or irradiation was
tested as described (Rickmyre et al.,
2007
).
Behavioral assays and TDT morphology
To assess the visually mediated jump response, white-eyed control
(w1118) and mutant flies (two days old) were dark adapted,
transferred without anesthesia to a Petri dish covered in vellum, and exposed
to a `lights off' stimulus using an LED light apparatus as described
(Fayyazuddin et al., 2006
).
Ten males per genotype were each tested in 10 trials separated by 30 seconds.
The climbing ability of adult males was assessed as described
(Silva et al., 2004
), with
three replicates per genotype. P-values were obtained using
two-tailed, unpaired Student's t-tests. To visualize TDT muscle
attachment sites, adult males (30 per genotype) were ventrally
trans-illuminated with a dissecting microscope lamp as described
(Edgecomb et al., 1993
).
Innate immunity assay
Adult males (5- to 7-days old) were injected using a Drummond Nanoject with
50 nl of an overnight culture of Escherichia coli resuspended in
phosphate-buffered saline. Six hours later, RNA was isolated by homogenizing
flies in STAT-60 buffer according to the manufacturer's directions (Isotex
Diagnostics). Following DNase treatment, cDNA was prepared by reverse
transcription using Superscript II (Invitrogen). A
diptericin-specific LUX primer (Invitrogen) was used to perform
quantitative real-time PCR with the 7300 Real-Time PCR System (Applied
Biosystems). diptericin levels were normalized to Rp49
levels as an endogenous control. Results from three independent experiments
were averaged and further normalized against buffer-injected Canton S flies.
P-values were obtained using a two-tailed, unpaired Student's
t-test.
|
| RESULTS |
|---|
|
|
|---|
|
|
nopo is maternally provided and essential solely in the early embryo
To gain further insights into the functions of nopo, we obtained
additional alleles. 5-SZ-3004 (abbreviated as SZ3004) and
EYG5845 are P-element insertions in the 5'-UTR of
nopo (Fig. 2A).
nopoSZ3004 females have decreased embryonic hatch rates
that are completely restored by precise P-element excision
(Table 1; data not shown).
nopoSZ3004 is weaker than nopoZ1447,
based on the percentage of mutant-derived embryos that develop to gastrulation
and embryonic hatching, and its phenotype is strongly temperature dependent.
We generated a null allele of nopo (Exc142) via imprecise
excision of EYG5845 (Fig.
2A; see Materials and methods). nopoExc142
adults are viable and appear normal, except that females are sterile,
producing embryos with the nopo phenotype
(Fig. 1G); a CG5140
transgene fully restored fertility (Table
1). nopoExc142 is stronger than
nopoZ1447 with 15% versus 72%, respectively, of their
embryos reaching cortical divisions, suggesting that
nopoZ1447 has residual function.
|
48
kDa band in wild-type embryos that is absent in
nopoExc142-derived (null) embryos. NOPO was not detected
in nopoSZ3004-derived embryos, although we occasionally
observed trace amounts (data not shown). Wild-type levels of NOPO were found
in nopoZ1447-derived embryos, suggesting that the E11K
mutation alters the function of NOPO, but not its stability. We assessed NOPO levels throughout Drosophila development (Fig. 2E). NOPO is abundant in ovaries and early (0- to 3-hour) embryos; trace amounts are present in older (3- to 24-hour) embryos. We did not detect NOPO in larval brains, imaginal discs, testes or adult carcasses lacking germline tissues. Subsequent experiments, however, revealed roles for NOPO outside of early embryonic development, suggesting that our antibodies might not be sufficiently sensitive to detect its expression during other stages (see below). Using the UAS/Gal4 system, we found NOPO overexpression in the female germline causes severely reduced egg-laying and hatch rates, whereas broad overexpression of NOPO in somatic cells causes lethality, which suggests that NOPO levels must be tightly regulated (data not shown).
The nopo phenotype is suppressed by mutation of the checkpoint kinase MNK (CHK2)
In Drosophila syncytial embryos, mitotic entry with incompletely
replicated or damaged DNA triggers a CHK2-mediated protective mechanism known
as centrosomal inactivation (Sibon et al.,
2000
; Takada et al.,
2003
). This damage-control system senses DNA defects and elicits
localized changes in spindle structure that block mitotic progression,
presumably to prevent the propagation of defective DNA. We previously reported
that embryos from microcephalin (mcph1) females arrest in
mitosis with acentrosomal, barrel-shaped spindles similar to those that we now
observe in nopo-derived embryos
(Rickmyre et al., 2007
). We
demonstrated that these mcph1 defects were suppressed by mutation of
maternal nuclear kinase (mnk), also known as loki,
which encodes Drosophila CHK2
(Abdu et al., 2002
;
Brodsky et al., 2004
;
Masrouha et al., 2003
;
Xu et al., 2001
). mnk
nulls exhibit increased sensitivity to ionizing radiation, but are viable and
fertile. Suppression of mcph1 by mnk revealed that
centrosomal inactivation significantly contributes to the mcph1
phenotype.
|
Like mcph1, we found that the developmental arrest of nopo mutants is suppressed by mnk (Fig. 3F,G; Table 2). In contrast to nopo-derived embryos, which arrest in syncytial divisions, most embryos from mnk nopo females complete syncytial divisions, cellularize, and arrest with aberrant morphology upon the initiation of gastrulation. Cellularized embryos from mnk nopo females contain unusually large DNA masses within irregularly sized cells compared with wild type. Thus, mnk suppresses the spindle/centrosomal defects and the developmental arrest of nopo mutants, but DNA defects appear to accumulate.
Based on these findings, we propose that nopo is required for the preservation of genomic integrity during syncytial embryogenesis. Lack of nopo activity leads to the occurrence of DNA defects, which then trigger CHK2-mediated centrosomal inactivation, thereby causing widespread mitotic arrest and the blockade of embryonic development. Mutation of mnk (Chk2) allows further nuclear divisions and developmental progression in nopo-derived embryos, despite the accumulation of extensive DNA defects that eventually lead to their arrest at the onset of gastrulation.
nopo-derived embryos exhibit decreased interphase length
The DNA-replication checkpoint mediated by MEI-41 and Grapes, orthologs of
ATR and CHK1, respectively, is developmentally activated in late syncytial
embryos of Drosophila (Sibon et
al., 1999
; Sibon et al.,
1997
). Checkpoint activation, which may be triggered by titration
of a maternal replication factor, leads to inhibitory phosphorylation of CDK1
and a gradual slowing of mitotic entry, presumably to allow sufficient time to
complete DNA replication. At MBT (cycle 14), the first G2 gap phase is
introduced. Embryos from mei-41 or grapes (grp)
mutant females fail to lengthen the interphases of late syncytial cycles and
are thought to enter mitosis without completing DNA replication; a secondary
damage-control system, CHK2-mediated centrosomal inactivation, then becomes
operational (Sibon et al.,
2000
; Takada et al.,
2003
).
Mitotic entry with incompletely replicated DNA can cause CHK2-mediated
centrosomal inactivation in syncytial embryos
(Sibon et al., 2000
;
Takada et al., 2003
). Control
mechanisms to ensure completion of DNA replication prior to mitosis may be
particularly critical during rapid S-M cycles. Oscillating CDK1-Cyclin B
activity plays a key role in coordinating these cycles
(Edgar et al., 1994
;
Su et al., 1998
). S-M
transitions appear to be controlled by Cyclin B levels prior to cycle 10, and
by both Cyclin B levels and a DNA-replication checkpoint in cycles 10-13
(Ji et al., 2004
;
Sibon et al., 1997
).
|
Based on our observations of shorter cycle 11 interphases in mnk nopo-derived embryos, we infer that interphases of earlier (precortical) syncytial cycles may be relatively short in nopo-derived embryos. We hypothesize that DNA replication is not completed during these truncated interphases, resulting in mitotic entry with unreplicated DNA, the triggering of CHK2-mediated centrosomal inactivation, and mitotic arrest with failure of further embryonic development.
Most embryos from nopo-null females arrest prior to the onset at
cycle 11 of a detectable DNA-replication checkpoint effect
(Table 1)
(Crest et al., 2007
). Thus, we
reasoned that nopo is unlikely to regulate interphase length via
mei-41/grp. Nonetheless, we tested the intactness of the
MEI-41/GRP-mediated DNA-replication checkpoint by assessing levels of CDK1
inhibitory phosphorylation in mnk nopo-derived embryos and found them
to be comparable to wild type (Fig.
4C). We also observed an intact DNA damage response by
nopo larvae treated with hydroxyurea, a DNA replication inhibitor, or
irradiation (see Table S1 in the supplementary material). We observed no
genetic interactions between nopo and mei-41 (data not
shown). We detected wild-type levels of Cyclin B and Cyclin A in mnk
nopo-derived embryos and observed no genetic interactions between
nopo and cyclin B (Fig.
4D; data not shown). These results suggest that nopo
regulates the S-M transition independent of the MEI-41/GRP-dependent
checkpoint and mitotic cyclin levels.
Drosophila NOPO and human TRIP co-localize to nuclear puncta in cultured mammalian cells
To determine the subcellular localization of NOPO, we used transfected
mammalian cells because our anti-NOPO antibodies did not work for
immunofluorescence, and epitope-tagged forms of NOPO expressed via
transgenesis were not stable in Drosophila embryos (data not shown).
We transfected HeLa cells with fluorescently tagged versions of
Drosophila NOPO and human TRIP (candidate homolog of NOPO) and
assessed their localization by immunofluorescence microscopy. Whereas eGFP
(control) was homogeneously distributed, eGFP-NOPO localized to nuclear puncta
in the majority of interphase cells (compare Fig.
5A with
5B); a similar pattern was
observed for Myc-tagged NOPO (data not shown). mCherry-TRIP also exhibited a
punctate distribution in nuclei (Fig.
5D). Co-expression of eGFP-NOPO and mCherry-TRIP in HeLa cells
confirmed their essentially identical localization patterns, underscoring the
likelihood that NOPO and TRIP are functional homologs
(Fig. 5C-E).
CREST staining of HeLa cells expressing eGFP-NOPO revealed that NOPO/TRIP
localizes to nuclear regions distinct from the centromeres. To assess whether
eGFP-NOPO localizes to nuclear puncta in a cell cycle-dependent manner, we
immunostained transfected HeLa cells for PCNA or Cyclin A. We found that
>99% of cells positive for eGFP-NOPO puncta were negative for insoluble
PCNA foci in the nucleus, a marker of S-phase
(Somanathan et al., 2001
). By
contrast,
97% of cells positive for eGFP-NOPO puncta were positive for
nuclear Cyclin A, a marker of both S and G2 phases
(Girard et al., 1991
). Taken
together, these data indicate that eGFP-NOPO specifically localizes to nuclear
puncta in transfected HeLa cells during G2 phase.
|
|
To confirm and extend these observations, we tested for interactions
between combinations of wild-type and mutant NOPO and BEN proteins in a yeast
two-hybrid assay (Fig. 6A). We
used mutant NOPO and BEN forms encoded by nopoZ1447 (E11K
in the RING domain; Fig. 2A-C)
and ben1 (proline to serine change at position 97)
(Muralidhar and Thomas, 1993
).
We found that both wild-type and mutant NOPO self-interact in this assay. When
used as bait, wild-type BEN strongly interacted with wild-type NOPO; we
occasionally observed weak interaction in the reverse direction (data not
shown). By contrast, wild-type BEN and mutant NOPO do not interact, and mutant
BEN interacts only marginally with wild-type or mutant NOPO.
We detected comparable levels of mutant and wild-type fusion proteins (both NOPO and BEN) in transformed yeast. Furthermore, nopoZ1447-derived embryos have wild-type NOPO levels, and ben1 ovaries have wild-type BEN levels (Fig. 2D; data not shown). Thus, the lack of two-hybrid interactions observed for mutant NOPO and BEN is likely to reflect changes in protein-protein interactions rather than decreased stability.
|
The E2 activity of Ubc13 has been shown in other systems to require
heterodimerization with a UEV (ubiquitin-conjugating E2 enzyme variant) family
member (Pickart, 2001
). UEV
proteins (Mms2p in budding yeast; Uev1A and Mms2 in mammals) resemble E2s but
lack an active site cysteine (Broomfield et
al., 1998
; Sancho et al.,
1998
). Our BLAST searches revealed a single UEV homolog in
Drosophila encoded by Uev1A. In our two-hybrid assay, UEV1A
interacted strongly with wild-type and mutant BEN, but not with NOPO
(Fig. 6A). Our attempts to
detect BEN-NOPO complexes in Drosophila embryos were unsuccessful,
however, possibly due to transience of this interaction (data not shown). Our
yeast two-hybrid data suggest that the RING domain of NOPO interacts directly
with BEN to promote the formation of a UEV1A-BEN-NOPO (E2-E3) complex.
ben-derived embryos have nopo-like defects
ben was identified in a screen for Drosophila mutants
with neuronal connectivity defects (Thomas
and Wyman, 1982
). Its yeast two-hybrid interaction with NOPO
suggested that BEN might regulate embryonic development. We found that embryos
from ben1 homozygotes or hemizygotes fail to develop,
revealing a new function for ben
(Table 3).
|
The spindle defects of ben1-derived embryos strikingly resemble those of nopo mutants (compare Fig. 7H,I with 7G). ben1 spindles are often acentrosomal, barrel-shaped, variable in width, and have misaligned chromosomes; similar phenotypes were observed in ben1 hemizygotes (Fig. 7J,K; Table 3). We were unable to test whether CHK2-mediated centrosomal inactivation causes mitotic arrest in ben-derived embryos because doubly homozygous adults were not viable. Taken together, the yeast two-hybrid interactions, co-localization, and similar mutant phenotypes that we have observed suggest that BEN-UEV1A and NOPO function together as an E2-E3 complex required to preserve genomic integrity during early embryonic development in Drosophila.
Assessment of ben-mediated functions in nopo mutants
Because a given E2 can act in concert with multiple E3 ubiquitin ligases
(Pickart, 2001
), we sought to
determine which activities of BEN are mediated by NOPO. We assayed our
nopo mutants for four additional biological functions previously
ascribed to BEN. The Drosophila giant fiber system (GFS) is a simple
neural circuit that mediates an escape response to visual stimuli
(Allen et al., 2006
). Because
ben is required for proper synaptic connectivity in the GFS,
ben mutant adults fail to elicit a normal jump response to a
light-off stimulus (Thomas and Wyman,
1982
; Thomas and Wyman,
1984
). ben mutant adults have also been reported to
exhibit abnormalities in thoracic musculature and impaired mobility, and a
role in innate immunity has been ascribed to ben
(Edgecomb et al., 1993
;
Zhou et al., 2005
).
|
| DISCUSSION |
|---|
|
|
|---|
We favor a model in which NOPO regulates the timing of S-M transitions in
syncytial embryos to ensure that S-phase is of sufficient length to allow the
completion of DNA replication prior to mitotic entry. The inhibition of DNA
replication in syncytial embryos (e.g. via aphidicolin injection) leads to
chromatin bridging in subsequent mitoses and CHK2 activation, both of which
occur in nopo-derived embryos, presumably because of mitotic entry
with unreplicated chromosomes (Raff and
Glover, 1988
; Takada et al.,
2003
). The mechanism by which NOPO coordinates S-M transitions is
unknown. Our data suggest that nopo may alter the timing of these
transitions independently of CDK1-Cyclin B, although localized changes in the
levels and/or activities of these regulators not detectable by immunoblotting
of whole-embryo lysates could play a crucial role. It is unclear why the
MEI-41/GRP-dependent checkpoint, which appears to be functional in
nopo-derived embryos, is not sufficient to slow mitotic entry.
The punctate nuclear localization observed for NOPO and its human homolog, TRIP, expressed in HeLa cells may indicate a direct role for these proteins in the regulation of chromatin structure. Furthermore, the G2 phase-specific localization that we observe for NOPO/TRIP in transfected HeLa cells may be consistent with a role for NOPO in slowing S-M transitions in syncytial embryos; in the absence of nopo, embryos that enter mitosis prematurely would probably do so without finishing DNA replication because of a lack of gap phases.
An alternative explanation for CHK2 activation in nopo-derived
embryos is that they might incur elevated levels of spontaneous DNA damage.
Syncytial embryos are considered to be unusual in that they activate CHK2 but
not CHK1 in response to DNA-damaging agents
(Fogarty et al., 1997
;
Sibon et al., 2000
;
Takada et al., 2007
). Thus,
spontaneous DNA damage would not be predicted to elicit the
MEI-41/GRP-mediated replication checkpoint but would cause CHK2-dependent
centrosomal inactivation during mitosis. Such a model would be consistent with
the apparent lack of activation of the MEI-41/GRP-dependent checkpoint in
nopo-derived embryos, although it would not explain why interphase 11
is shortened.
We previously reported that syncytial embryos from microcephalin
(mcph1) mutant females undergo mitotic arrest with a phenotype
similar to that described herein for nopo
(Rickmyre et al., 2007
). Like
nopo, CHK2-mediated centrosomal inactivation causes mitotic arrest in
embryos lacking mcph1. nopo and mcph1 are unique among
maternal-effect lethal mutants in which CHK2-mediated centrosomal inactivation
has been reported (e.g. grp, mei-41, wee1) in that their phenotypes
appear to be more severe: centrosomes typically detach from spindles, and
mitotic arrest occurs earlier, during precortical syncytial divisions
(Rickmyre et al., 2007
;
Sibon et al., 2000
;
Stumpff et al., 2004
;
Takada et al., 2003
). The
underlying defects in nopo and mcph1 mutants may be
distinct, however, because mnk mcph1-derived embryos exhibit normal
cycle 11 interphase length, which is truncated in mnk nopo-derived
embryos (Rickmyre et al.,
2007
). Furthermore, we did not detect a genetic interaction
between nopo and mcph1 (J.L.R., J.A.M. and L.A.L.,
unpublished).
Mammalian TRIP was identified in a yeast two-hybrid screen for tumor
necrosis factor (TNF) receptor-associated factor (TRAF) interactors
(Lee et al., 1997
). TRAFs
transduce signals from members of the tumor necrosis factor (TNF)/tumor
necrosis factor receptor (TNFR) superfamily, which elicit diverse cellular
responses in the immune and inflammatory systems
(Hehlgans and Pfeffer, 2005
).
TRIP has been reported to inhibit TRAF2-mediated NF
B activation; the
RING domain of TRIP, however, was not required for inhibition
(Lee et al., 1997
). By
contrast, our analysis of nopoZ1447 indicates that this
motif is essential for NOPO function in Drosophila embryogenesis,
probably by mediating its interactions with E2 components, as has been shown
for other E3 ligases (Passmore and
Barford, 2004
). Drosophila Eiger (TNF ligand) and Wengen
(TNF receptor) play roles in dorsal closure, neuroblast divisions, and the
response to fungal pathogens (Kauppila et
al., 2003
; Schneider et al.,
2007
; Wang et al.,
2006
). A role for TNF signaling in early Drosophila
embryogenesis has not been reported to our knowledge.
TRIP was recently reported to be an essential factor in mice
(Park et al., 2007
).
TRIP-deficient mice die soon after implantation as a result of defects in
early embryonic development. Compared with wild-type littermates,
TRIP-/- embryos are smaller in size with a reduced cell number.
TRAF2 does not appear to be required until later in development, suggesting
that TRIP has TRAF2-independent roles in early embryos
(Nguyen et al., 1999
). It will
be interesting to see whether mammalian TRIP, by analogy to
Drosophila NOPO, is required for genomic integrity during embryonic
development.
Our data support a model in which NOPO ubiquitin ligase acts in concert with BEN-UEV1A heterodimers to regulate Drosophila syncytial embryogenesis. The yeast two-hybrid interaction and co-localization of NOPO and BEN led us to identify an unanticipated role for BEN in early embryogenesis and additional roles for NOPO in synapse formation and innate immunity. Although the spindle defects of ben-derived embryos are strikingly similar to those of nopo mutants, they typically arrest earlier in syncytial development, suggesting that another E3 ligase that requires BEN may function in parallel with NOPO. Although nopo egg chambers appear normal, we have not ruled out a possible requirement for BEN-UEV1A-NOPO complexes during oogenesis; some defects in nopo- and ben-derived embryos could be a secondary consequence of previous defects during oogenesis.
K63-linked ubiquitin chains are thought to act as non-proteolytic signals
(e.g. affecting protein localization and/or interactions), whereas K48-linked
ubiquitin chains have established roles in targeting proteins for
proteasome-mediated degradation (Pickart
and Fushman, 2004
). BEN-UEV1A E2 homologs in budding yeast
(Ubc13-Mms2p) mediate K63-linked polyubiquitination of PCNA during
postreplicative repair (Andersen et al.,
2005
). In mammalian cells, the E2 heterodimer Ubc13-Mms2 mediates
DNA damage repair, while Ubc13-Uev1A promotes NF
B activation; both E2
complexes regulate these processes by mediating K63 ubiquitin chain assembly
on target proteins. We propose that BEN-UEV1A-NOPO (E2-E3) complexes mediate
the assembly of K63-linked ubiquitin chains on proteins that preserve genomic
integrity in early Drosophila embryogenesis.
Supplementary material
Supplementary material for this article is available at
http://dev.biologists.org/cgi/content/full/136/3/449/DC1
| Footnotes |
|---|
| REFERENCES |
|---|
|
|
|---|
Abdu, U., Brodsky, M. and Schupbach, T. (2002).
Activation of a meiotic checkpoint during Drosophila oogenesis
regulates the translation of Gurken through Chk2/Mnk. Curr.
Biol. 12,1645
-1651.[CrossRef][Medline]
Allen, M. J., Godenschwege, T. A., Tanouye, M. A. and Phelan,
P. (2006). Making an escape: development and function of the
Drosophila giant fibre system. Semin. Cell Dev.
Biol. 17,31
-41.[CrossRef][Medline]
Andersen, P. L., Zhou, H., Pastushok, L., Moraes, T., McKenna,
S., Ziola, B., Ellison, M. J., Dixit, V. M. and Xiao, W.
(2005). Distinct regulation of Ubc13 functions by the two
ubiquitin-conjugating enzyme variants Mms2 and Uev1A. J. Cell
Biol. 170,745
-755.
Besse, A., Campos, A. D., Webster, W. K. and Darnay, B. G.
(2007). TRAF-interacting protein (TRIP) is a RING-dependent
ubiquitin ligase. Biochem. Biophys. Res. Commun.
359,660
-664.[CrossRef][Medline]
Branzei, D. and Foiani, M. (2008). Regulation
of DNA repair throughout the cell cycle. Nat. Rev. Mol. Cell
Biol. 9,297
-308.[CrossRef][Medline]
Brodsky, M. H., Weinert, B. T., Tsang, G., Rong, Y. S.,
McGinnis, N. M., Golic, K. G., Rio, D. C. and Rubin, G. M.
(2004). Drosophila melanogaster MNK/Chk2 and p53
regulate multiple DNA repair and apoptotic pathways following DNA damage.
Mol. Cell. Biol. 24,1219
-1231.
Broomfield, S., Chow, B. L. and Xiao, W.
(1998). MMS2, encoding a ubiquitin-conjugating-enzyme-like
protein, is a member of the yeast error-free postreplication repair pathway.
Proc. Natl. Acad. Sci. USA
95,5678
-5683.
Chen, B., Chu, T., Harms, E., Gergen, J. P. and Strickland,
S. (1998). Mapping of Drosophila mutations using
site-specific male recombination. Genetics
149,157
-163.
Crest, J., Oxnard, N., Ji, J. Y. and Schubiger, G.
(2007). Onset of the DNA replication checkpoint in the early
Drosophila embryo. Genetics
175,567
-584.
Ditzel, M. and Meier, P. (2005). Ubiquitylation
in apoptosis: DIAP1's (N-)en(d)igma. Cell Death
Differ. 12,1208
-1212.[CrossRef][Medline]
Edgar, B. A., Sprenger, F., Duronio, R. J., Leopold, P. and
O'Farrell, P. H. (1994). Distinct molecular mechanism
regulate cell cycle timing at successive stages of Drosophila
embryogenesis. Genes Dev.
8, 440-452.
Edgecomb, R. S., Ghetti, C. and Schneiderman, A. M.
(1993). Bendless alters thoracic musculature in
Drosophila. J. Neurogenet.
8, 201-219.[Medline]
Fayyazuddin, A., Zaheer, M. A., Hiesinger, P. R. and Bellen, H.
J. (2006). The nicotinic acetylcholine receptor Dalpha7 is
required for an escape behavior in Drosophila. PLoS
Biol. 4,e63
.[CrossRef][Medline]
Foe, V. E., Odell, G. M. and Edgar, B. A.
(1993). Mitosis and morphogenesis in the Drosophila
embryo: point and counterpoint. In The Development of Drosophila
Melanogaster (ed. M. Bate and A. Martinez Arias), pp.149
-300. Cold Spring Harbor, NY: Cold Spring Harbor
Laboratory Press.
Fogarty, P., Campbell, S. D., Abu-Shumays, R., Phalle, B. S.,
Yu, K. R., Uy, G. L., Goldberg, M. L. and Sullivan, W.
(1997). The Drosophila grapes gene is related to
checkpoint gene chk1/rad27 and is required for late syncytial
division fidelity. Curr. Biol.
7, 418-426.[CrossRef][Medline]
Freemont, P. S. (2000). RING for destruction?
Curr. Biol. 10,R84
-R87.[CrossRef][Medline]
Garcia, K., Duncan, T. and Su, T. T. (2007).
Analysis of the cell division cycle in Drosophila.
Methods 41,198
-205.[CrossRef][Medline]
Giot, L., Bader, J. S., Brouwer, C., Chaudhuri, A., Kuang, B.,
Li, Y., Hao, Y. L., Ooi, C. E., Godwin, B., Vitols, E. et al.
(2003). A protein interaction map of Drosophila
melanogaster. Science
302,1727
-1736.
Girard, F., Strausfeld, U., Fernandez, A. and Lamb, N. J. C.
(1991). Cyclin A is required for the onset of DNA replication in
mammalian fibroblasts. Cell
67,1169
-1179.[CrossRef][Medline]
Grumbling, G. and Strelets, V. (2006). FlyBase:
anatomical data, images and queries. Nucleic Acids
Res. 34,D484
-D488.
Harper, J. W. and Elledge, S. J. (2007). The
DNA damage response: ten years after. Mol. Cell
28,739
-745.[Medline]
Hehlgans, T. and Pfeffer, K. (2005). The
intriguing biology of the tumour necrosis factor/tumour necrosis factor
receptor superfamily: players, rules and the games.
Immunology 115,1
-20.[CrossRef][Medline]
Jackson, P. K., Eldridge, A. G., Freed, E., Furstenthal, L.,
Hsu, J. Y., Kaiser, B. K. and Reimann, J. D. (2000). The lore
of the RINGs: substrate recognition and catalysis by ubiquitin ligases.
Trends Cell Biol. 10,429
-439.[CrossRef][Medline]
James, P., Halladay, J. and Craig, E. A.
(1996). Genomic libraries and a host strain designed for highly
efficient two-hybrid selection in yeast. Genetics
144,1425
-1436.[Abstract]
Ji, J. Y., Squirrell, J. M. and Schubiger, G.
(2004). Both cyclin B levels and DNA-replication checkpoint
control the early embryonic mitoses in Drosophila.
Development 131,401
-411.
Kauppila, S., Maaty, W. S., Chen, P., Tomar, R. S., Eby, M. T.,
Chapo, J., Chew, S., Rathore, N., Zachariah, S., Sinha, S. K. et al.
(2003). Eiger and its receptor, Wengen, comprise a TNF-like
system in Drosophila. Oncogene
22,4860
-4867.[CrossRef][Medline]
Koundakjian, E. J., Cowan, D. M., Hardy, R. W. and Becker, A.
H. (2004). The Zuker collection: a resource for the analysis
of autosomal gene function in Drosophila melanogaster.
Genetics 167,203
-206.
Lee, L. A. and Orr-Weaver, T. L. (2003).
Regulation of cell cycles in Drosophila development: intrinsic and
extrinsic cues. Annu. Rev. Genet.
37,545
-578.[CrossRef][Medline]
Lee, L. A., Van Hoewyk, D. and Orr-Weaver, T. L.
(2003). The Drosophila cell cycle kinase PAN GU forms an
active complex with PLUTONIUM and GNU to regulate embryonic divisions.
Genes Dev. 17,2979
-2991.
Lee, S. Y., Lee, S. Y. and Choi, Y. (1997).
TRAF-interacting protein (TRIP): a novel component of the tumor necrosis
factor receptor (TNFR)- and CD30-TRAF signaling complexes that inhibits
TRAF2-mediated NF-kappaB activation. J. Exp. Med.
185,1275
-1285.
Li, K. and Kaufman, T. C. (1996). The homeotic
target gene centrosomin encodes an essential centrosomal component.
Cell 85,585
-596.[CrossRef][Medline]
Lorick, K. L., Jensen, J. P., Fang, S., Ong, A. M., Hatakeyama,
S. and Weissman, A. M. (1999). RING fingers mediate
ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc.
Natl. Acad. Sci. USA 96,11364
-11369.
Masrouha, N., Yang, L., Hijal, S., Larochelle, S. and Suter,
B. (2003). The Drosophila chk2 gene loki is
essential for embryonic DNA double-strand-break checkpoints induced in S phase
or G2. Genetics 163,973
-982.
Muralidhar, M. G. and Thomas, J. B. (1993). The
Drosophila bendless gene encodes a neural protein related to
ubiquitin-conjugating enzymes. Neuron
11,253
-266.[CrossRef][Medline]
Nguyen, L. T., Duncan, G. S., Mirtsos, C., Ng, M., Speiser, D.
E., Shahinian, A., Marino, M. W., Mak, T. W., Ohashi, P. S. and Yeh, W. C.
(1999). TRAF2 deficiency results in hyperactivity of certain
TNFR1 signals and impairment of CD40-mediated responses.
Immunity 11,379
-389.[CrossRef][Medline]
Oh, C. E., McMahon, R., Benzer, S. and Tanouye, M. A.
(1994). bendless, a Drosophila gene affecting neuronal
connectivity, encodes a ubiquitin-conjugating enzyme homolog. J.
Neurosci. 14,3166
-3179.[Abstract]
Park, E. S., Choi, S., Kim, J. M., Jeong, Y., Choe, J., Park, C.
S., Choi, Y. and Rho, J. (2007). Early embryonic lethality
caused by targeted disruption of the TRAF-interacting protein (TRIP) gene.
Biochem. Biophys. Res. Commun.
363,971
-977.[CrossRef][Medline]
Passmore, L. A. and Barford, D. (2004). Getting
into position: the catalytic mechanisms of protein ubiquitylation.
Biochem. J. 379,513
-525.[CrossRef][Medline]
Pickart, C. M. (2001). Mechanisms underlying
ubiquitination. Annu. Rev. Biochem.
70,503
-533.[CrossRef][Medline]
Pickart, C. M. and Fushman, D. (2004).
Polyubiquitin chains: polymeric protein signals. Curr. Opin. Chem.
Biol. 8,610
-616.[CrossRef][Medline]
Raff, J. W. and Glover, D. M. (1988). Nuclear
and cytoplasmic mitotic cycles continue in Drosophila embryos in which DNA
synthesis is inhibited with aphidicolin. J. Cell Biol.
107,2009
-2019.
Rickmyre, J. L., Dasgupta, S., Ooi, D. L., Keel, J., Lee, E.,
Kirschner, M. W., Waddell, S. and Lee, L. A. (2007). The
Drosophila homolog of MCPH1, a human microcephaly gene, is required
for genomic stability in the early embryo. J. Cell
Sci. 120,3565
-3577.
Rubin, G. M. and Spradling, A. C. (1982).
Genetic transformation of Drosophila with transposable element
vectors. Science 218,348
-353.
Sancho, E., Vila, M. R., Sanchez-Pulido, L., Lozano, J. J.,
Paciucci, R., Nadal, M., Fox, M., Harvey, C., Bercovich, B., Loukili, N. et
al. (1998). Role of UEV-1, an inactive variant of the E2
ubiquitin-conjugating enzymes, in in vitro differentiation and cell
cycle behavior of HT-29-M6 intestinal mucosecretory cells. Mol.
Cell. Biol. 18,576
-589.
Saurin, A. J., Borden, K. L., Boddy, M. N. and Freemont, P.
S. (1996). Does this have a familiar RING? Trends
Biochem. Sci. 21,208
-214.[CrossRef][Medline]
Schneider, D. S., Ayres, J. S., Brandt, S. M., Costa, A.,
Dionne, M. S., Gordon, M. D., Mabery, E. M., Moule, M. G., Pham, L. N. and
Shirasu-Hiza, M. M. (2007). Drosophila eiger mutants
are sensitive to extracellular pathogens. PLoS Pathog.
3, e41.[CrossRef][Medline]
Sibon, O. C., Stevenson, V. A. and Theurkauf, W. E.
(1997). DNA-replication checkpoint control at the
Drosophila midblastula transition. Nature
388, 93-97.[CrossRef][Medline]
Sibon, O. C., Laurencon, A., Hawley, R. and Theurkauf, W. E.
(1999). The Drosophila ATM homologue Mei-41 has an
essential checkpoint function at the midblastula transition. Curr.
Biol. 9,302
-312.[CrossRef][Medline]
Sibon, O. C., Kelkar, A., Lemstra, W. and Theurkauf, W. E.
(2000). DNA-replication/DNA-damage-dependent centrosome
inactivation in Drosophila embryos. Nat. Cell
Biol. 2,90
-95.[CrossRef][Medline]
Silva, E., Tiong, S., Pedersen, M., Homola, E., Royou, A.,
Fasulo, B., Siriaco, G. and Campbell, S. D. (2004). ATM is
required for telomere maintenance and chromosome stability during
Drosophila development. Curr. Biol.
14,1341
-1347.[CrossRef][Medline]
Somanathan, S., Suchyna, T. M., Siegel, A. J. and Berezney,
R. (2001). Targeting of PCNA to sites of DNA replication in
the mammalian cell nucleus. J. Cell. Biochem.
81, 56-67.[CrossRef][Medline]
Stumpff, J., Duncan, T., Homola, E., Campbell, S. D. and Su, T.
T. (2004). Drosophila Wee1 kinase regulates Cdk1 and
mitotic entry during embryogenesis. Curr. Biol.
14,2143
-2148.[CrossRef][Medline]
Su, T. T., Sprenger, F., DiGregorio, P. J., Campbell, S. D. and
O'Farrell, P. H. (1998). Exit from mitosis in
Drosophila syncytial embryos requires proteolysis and cyclin
degradation, and is associated with localized dephosphorylation.
Genes Dev. 12,1495
-1503.
Takada, S., Kelkar, A. and Theurkauf, W. E.
(2003). Drosophila checkpoint kinase 2 couples
centrosome function and spindle assembly to genomic integrity.
Cell 113,87
-99.[CrossRef][Medline]
Takada, S., Kwak, S., Koppetsch, B. S. and Theurkauf, W. E.
(2007). grp (chk1) replication-checkpoint mutations and DNA
damage trigger a Chk2-dependent block at the Drosophila midblastula
transition. Development
134,1737
-1744.
Tang, T. T., Bickel, S. E., Young, L. M. and Orr-Weaver, T.
L. (1998). Maintenance of sister-chromatid cohesion at the
centromere by the Drosophila MEI-S332 protein. Genes
Dev. 12,3843
-3856.
Thomas, J. B. and Wyman, R. J. (1982). A
mutation in Drosophila alters normal connectivity between two
identified neurones. Nature
298,650
-651.[CrossRef][Medline]
Thomas, J. B. and Wyman, R. J. (1984).
Mutations altering synaptic connectivity between identified neurons in
Drosophila. J. Neurosci.
4, 530-538.[Abstract]
Wang, H., Cai, Y., Chia, W. and Yang, X.
(2006). Drosophila homologs of mammalian
TNF/TNFR-related molecules regulate segregation of Miranda/Prospero in
neuroblasts. EMBO J. 25,5783
-5793.[CrossRef][Medline]
Xu, J., Xin, S. and Du, W. (2001).
Drosophila Chk2 is required for DNA damage-mediated cell cycle arrest
and apoptosis. FEBS Lett.
508,394
-398.[CrossRef][Medline]
Zhou, R., Silverman, N., Hong, M., Liao, D. S., Chung, Y., Chen,
Z. J. and Maniatis, T. (2005). The role of ubiquitination in
Drosophila innate immunity. J. Biol. Chem.
280,34048
-34055.
Related articles in Development:
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||