The hardwiring of development: organization and function of genomic regulatory systems

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				J. P. Balhoff and G. A. Wray Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites PNAS, June 14, 2005; 102(24): 8591 - 8596. [Abstract] [Full Text] [PDF]

				Z. Zhu, J. Shendure, and G. M. Church Discovering functional transcription-factor combinations in the human cell cycle Genome Res., June 1, 2005; 15(6): 848 - 855. [Abstract] [Full Text] [PDF]

				S. Istrail and E. H. Davidson Gene Regulatory Networks Special Feature: Logic functions of the genomic cis-regulatory code PNAS, April 5, 2005; 102(14): 4954 - 4959. [Abstract] [Full Text] [PDF]

				T. A. Down and T. J. P. Hubbard NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence Nucleic Acids Res., March 10, 2005; 33(5): 1445 - 1453. [Abstract] [Full Text] [PDF]

				S. Hooshangi, S. Thiberge, and R. Weiss Ultrasensitivity and noise propagation in a synthetic transcriptional cascade PNAS, March 8, 2005; 102(10): 3581 - 3586. [Abstract] [Full Text] [PDF]

				B. Pulendran Variegation of the Immune Response with Dendritic Cells and Pathogen Recognition Receptors J. Immunol., March 1, 2005; 174(5): 2457 - 2465. [Abstract] [Full Text] [PDF]

				J.-Y. Lee, S. F. Baum, J. Alvarez, A. Patel, D. H. Chitwood, and J. L. Bowman Activation of CRABS CLAW in the Nectaries and Carpels of Arabidopsis PLANT CELL, January 1, 2005; 17(1): 25 - 36. [Abstract] [Full Text] [PDF]

				G. P. Wagner, C. Fried, S. J. Prohaska, and P. F. Stadler Divergence of Conserved Non-Coding Sequences: Rate Estimates and Relative Rate Tests Mol. Biol. Evol., November 1, 2004; 21(11): 2116 - 2121. [Abstract] [Full Text] [PDF]

				S. MacArthur and J. F. Y. Brookfield Expected Rates and Modes of Evolution of Enhancer Sequences Mol. Biol. Evol., June 1, 2004; 21(6): 1064 - 1073. [Abstract] [Full Text] [PDF]

				G. Kreiman Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes Nucleic Acids Res., May 20, 2004; 32(9): 2889 - 2900. [Abstract] [Full Text] [PDF]

				H. Wang, L. V. Caruso, A. B. Downie, and S. E. Perry The Embryo MADS Domain Protein AGAMOUS-Like 15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism PLANT CELL, May 1, 2004; 16(5): 1206 - 1219. [Abstract] [Full Text] [PDF]