Kinetic analysis of segmentation gene interactions in Drosophila embryos

QUICK SEARCH:

[advanced]

	Author:		Keyword(s):

Home Help Feedback Subscriptions Archive Search Table of Contents

This Article

	Summary
	Full Text (PDF)
	Alert me when this article is cited
	Alert me if a correction is posted

Services

	Email this article to a friend
	Similar articles in this journal
	Similar articles in PubMed
	Alert me to new issues of the journal
	Download to citation manager


Citing Articles

	Citing Articles via HighWire
	Citing Articles via Google Scholar

Google Scholar

	Articles by Nasiadka, A.
	Articles by Krause, H. M.
	Search for Related Content

PubMed

	PubMed Citation
	Articles by Nasiadka, A.
	Articles by Krause, H. M.

Baumgartner, S., Bopp, D., Burri, M. and Noll, M (1987). Structure of two genes at the gooseberry locus related to the paired gene and their spatial expression during Drosophila embryogenesis. Genes Dev 1, 1247-67.[Abstract/Free Full Text]

Baumgartner, S. and Noll, M (1990). Network of interactions among pair-rule genes regulating paired expression during primordial segmentation of Drosophila. Mech. Dev 33, 1-18.[Medline]

Cai, J., Lan, Y., Appel, L. F. and Weir, M (1994). Dissection of the Drosophila paired protein: functional requirements for conserved motifs. Mech. Dev 47, 139-50.[Medline]

Capovilla, M., Brandt, M. and Botas, J (1994). Direct regulation of decapentaplegic by Ultrabithorax and its role in Drosophila midgut morphogenesis. Cell 76, 461-75.[Medline]

Carroll, S. B. and Scott, M. P (1986). Zygotically active genes that affect the spatial expression of the fushi tarazu segmentation gene during early Drosophila embryogenesis. Cell 45, 113-26.[Medline]

Chan, S. K., Jaffe, L., Capovilla, M., Botas, J. and Mann, R. S (1994). The DNA binding specificity of Ultrabithorax is modulated by cooperative interactions with extradenticle, another homeoprotein. Cell 78, 603-15.[Medline]

Copeland, J. W., Nasiadka, A., Dietrich, B. H. and Krause, H. M (1996). Patterning of the Drosophila embryo by a homeodomain-deleted Ftz polypeptide. Nature 379, 162-5.[Medline]

Coulter, D. E., Swaykus, E. A., Beran-Koehn, M. A., Goldberg, D., Wieschaus, E. and Schedl, P (1990). Molecular analysis of odd-skipped, a zinc finger encoding segmentation gene with a novel pair-rule expression pattern. EMBO J 9, 3795-804.[Medline]

DeRisi, J. L., Iyer, V. R. and Brown, P. O (1997). Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278, 680-6.[Abstract/Free Full Text]

Desplan, C., Theis, J. and O'Farrell, P. H (1988). The sequence specificity of homeodomain-DNA interaction. Cell 54, 1081-90.[Medline]

DiNardo, S. and O'Farrell, P. H (1987). Establishment and refinement of segmental pattern in the Drosophila embryo: spatial control of engrailed expression by pair-rule genes. Genes Dev 1, 1212-25.[Abstract/Free Full Text]

Drees, B., Ali, Z., Soeller, W. C., Coleman, K. G., Poole, S. J. and Kornberg, T (1987). The transcription unit of the Drosophila engrailed locus: an unusually small portion of a 70,000 bp gene. EMBO J 6, 2803-9.[Medline]

Driever, W., Thoma, G. and Nusslein-Volhard, C (1989). Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen. Nature 340, 363-7.[Medline]

Edgar, B. A., Weir, M. P., Schubiger, G. and Kornberg, T (1986). Repression and turnover pattern fushi tarazu RNA in the early Drosophila embryo. Cell 47, 747-54.[Medline]

Edgar, B. A., Odell, G. M. and Schubiger, G (1987). Cytoarchitecture and the patterning of fushi tarazu expression in the Drosophila blastoderm. Genes Dev 1, 1226-37.[Abstract/Free Full Text]

Fajas, L., Fruchart, J. C. and Auwerx, J (1998). Transcriptional control of adipogenesis. Curr. Opin. Cell Biol 10, 165-73.[Medline]

Fitzpatrick, V. D., Percival-Smith, A., Ingles, C. J. and Krause, H. M (1992). Homeodomain-independent activity of the fushi tarazu polypeptide in Drosophila embryos. Nature 356, 610-2.[Medline]

Florence, B., Guichet, A., Ephrussi, A. and Laughon, A (1997). Ftz-F1 is a cofactor in Ftz activation of the Drosophila engrailed gene. Development 124, 839-47.[Abstract]

Frigerio, G., Burri, M., Bopp, D., Baumgartner, S. and Noll, M (1986). Structure of the segmentation gene paired and the Drosophila PRD gene set as part of a gene network. Cell 47, 735-46.[Medline]

Gergen, J. P. and Butler, B. A (1988). Isolation of the Drosophila segmentation gene runt and analysis of its expression during embryogenesis. Genes Dev 2, 1179-93.[Abstract/Free Full Text]

Gilmour, D. S. and Lis, J. T (1986). RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. Mol. Cell Biol 6, 3984-9.[Abstract/Free Full Text]

Gould, A. P., Brookman, J. J., Strutt, D. I. and White, R. A (1990). Targets of homeotic gene control in Drosophila [published erratum appears in Nature 1990 Dec 6;348(6301):560]. Nature 348, 308-12.[Medline]

Guichet, A., Copeland, J. W., Erdelyi, M., Hlousek, D., Zavorszky, P., Ho, J., Brown, S., Percival-Smith, A., Krause, H. M. and Ephrussi, A (1997). The nuclear receptor homologue Ftz-F1 and the homeodomain protein Ftz are mutually dependent cofactors. Nature 385, 548-52.[Medline]

Gutjahr, T., Vanario-Alonso, C. E., Pick, L. and Noll, M (1994). Multiple regulatory elements direct the complex expression pattern of the Drosophila segmentation gene paired. Mech. Dev 48, 119-28.[Medline]

Han, K., Levine, M. S. and Manley, J. L (1989). Synergistic activation and repression of transcription by Drosophila homeobox proteins. Cell 56, 573-83.[Medline]

Han, W., Yu, Y., Su, K., Kohanski, R. A. and Pick, L (1998). A binding site for multiple transcriptional activators in the fushi tarazu proximal enhancer is essential for gene expression in vivo. Mol. Cell Biol 18, 3384-94.[Abstract/Free Full Text]

Harding, K., Rushlow, C., Doyle, H. J., Hoey, T. and Levine, M (1986). Cross-regulatory interactions among pair-rule genes in Drosophila. Science 233, 953-9.[Abstract/Free Full Text]

Hiromi, Y., Kuroiwa, A. and Gehring, W. J (1985). Control elements of the Drosophila segmentation gene fushi tarazu. Cell 43, 603-13.[Medline]

Hiromi, Y. and Gehring, W. J (1987). Regulation and function of the Drosophila segmentation gene fushi tarazu. Cell 50, 963-74.[Medline]

Holstege, F. C. P., Jennings, E. G., Wyrick, J. J., Lee, T. I., Hengartner, C. J., Green, M. R., Golub, T. R., Lander, T. S. and Young, R. A (1998). Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95, 717-728.[Medline]

Howard, K. and Ingham, P (1986). Regulatory interactions between the segmentation genes fushi tarazu, hairy, and engrailed in the Drosophila blastoderm. Cell 44, 949-57.[Medline]

Howard, K. R. and Struhl, G (1990). Decoding positional information: regulation of the pair-rule gene hairy. Development 110, 1223-31.[Abstract/Free Full Text]

Huibregtse, J. M. and Engelke, D. R (1989). Genomic footprinting of a yeast tRNA gene reveals stable complexes over the 5-flanking region. Mol. Cell Biol 9, 3244-52.[Abstract/Free Full Text]

Hulskamp, M., Pfeifle, C. and Tautz, D (1990). A morphogenetic gradient of hunchback protein organizes the expression of the gap genes Kruppel and knirps in the early Drosophila embryo. Nature 346, 577-80.[Medline]

Ingham, P. and Gergen, P (1988). Interactions between the pair-rule genes runt , hairy , even-skipped and fushi tarazu and establishment of periodic pattern in the Drosophila embryo. Development 104, 51-60.[Abstract]

Ingham, P. W., Baker, N. E. and Martinez-Arias, A (1988). Regulation of segment polarity genes in the Drosophila blastoderm by fushi tarazu and even skipped. Nature 331, 73-5.[Medline]

Ingham, P. W. and Martinez Arias, A (1992). Boundaries and fields in early embryos. Cell 68, 221-35.[Medline]

Ish-Horowicz, D., Howard, K. R., Pinchin, S. M. and Ingham, P. W (1985). Molecular and genetic analysis of the hairy locus in Drosophila. Cold Spring Harb. Symp. Quant. Biol 50, 135-44.[Medline]

Ish-Horowicz, D. and Pinchin, S. M (1987). Pattern abnormalities induced by ectopic expression of the Drosophila gene hairy are associated with repression of ftz transcription. Cell 51, 405-15.[Medline]

Ish-Horowicz, D., Pinchin, S. M., Ingham, P. W. and Gyurkovics, H. G (1989). Autocatalytic ftz activation and metameric instability induced by ectopic ftz expression. Cell 57, 223-32.[Medline]

Jiang, J., Hoey, T. and Levine, M (1991). Autoregulation of a segmentation gene in Drosophila: combinatorial interaction of the even-skipped homeo box protein with a distal enhancer element. Genes Dev 5, 265-77.[Abstract/Free Full Text]

Jimenez, G., Pinchin, S. M. and Ish-Horowicz, D (1996). In vivo interactions of the Drosophila Hairy and Runt transcriptional repressors with target promoters. EMBO J 15, 7088-98.[Medline]

John, A., Smith, S. T. and Jaynes, J. B (1995). Inserting the Ftz homeodomain into engrailed creates a dominant transcriptional repressor that specifically turns off Ftz target genes in vivo. Development 121, 1801-13.[Abstract]

Kellerman, K. A., Mattson, D. M. and Duncan, I (1990). Mutations affecting the stability of the fushi tarazu protein of Drosophila. Genes Dev 4, 1936-50.[Abstract/Free Full Text]

Kilchherr, F., Baumgartner, S., Bopp, D., Frei, E. and Noll, M (1986). Isolation of the paired gene of Drosophila and its spatial expression during early embryogenesis. Nature 321, 493-9.

Klingler, M. and Gergen, J. P (1993). Regulation of runt transcription by Drosophila segmentation genes. Mech Dev 43, 3-19.[Medline]

Klingler, M., Soong, J., Butler, B. and Gergen, J. P (1996). Disperse versus compact elements for the regulation of runt stripes in Drosophila. Dev. Biol 177, 73-84.[Medline]

Kornberg, T (1981). Engrailed: a gene controlling compartment and segment formation in Drosophila. Proc. Natl. Acad. Sci. USA 78, 1095-9.[Abstract/Free Full Text]

Kraut, R. and Levine, M (1991). Mutually repressive interactions between the gap genes giant and Kruppel define middle body regions of the Drosophila embryo. Development 111, 611-21.[Abstract]

Kuroiwa, A., Hafen, E. and Gehring, W. J (1984). Cloning and transcriptional analysis of the segmentation gene fushi tarazu of Drosophila. Cell 37, 825-31.[Medline]

Lawrence, P. A., Johnston, P., Macdonald, P. and Struhl, G (1987). Borders of parasegments in Drosophila embryos are delimited by the fushi tarazu and even-skipped genes. Nature 328, 440-2.[Medline]

Lewis, R. A., Kaufman, T. C., Denell, R. E. and Tallerico, P (1980). Genetic analysis of the Antennapedia gene complex (ANT-C) and adjacent chromosomal regions of Drosophila melanogaster . I. Polytene chromosome segments 84B-D. Genetics 95, 367-381.[Abstract/Free Full Text]

Lewis, R. A., Wakimoto, B. T., Denell, R. E. and Kaufman, T. C (1980). Genetic analysis of the Antennapedia gene complex (ANT-C) and adjacent chromosomal regions of Drosophila melanogaster . II. Polytene chromosome segments 84A-84B1,2. Genetics 95, 383-397.[Abstract/Free Full Text]

Li, X. and Noll, M (1993). Role of the gooseberry gene in Drosophila embryos: maintenance of wingless expression by a wingless\321gooseberry autoregulatory loop. EMBO J 12, 4499-509.[Medline]

Macdonald, P. M., Ingham, P. and Struhl, G (1986). Isolation, structure, and expression of even-skipped: a second pair-rule gene of Drosophila containing a homeo box. Cell 47, 721-34.[Medline]

Manoukian, A. S. and Krause, H. M (1992). Concentration-dependent activities of the even-skipped protein in Drosophila embryos. Genes Dev 6, 1740-51.[Abstract/Free Full Text]

Manoukian, A. S. and Krause, H. M (1993). Control of segmental asymmetry in Drosophila embryos. Development 118, 785-96.[Abstract]

Mirkovitch, J. and Darnell, J. E., Jr (1991). Rapid in vivo footprinting technique identifies proteins bound to the TTR gene in the mouse liver. Genes Dev 5, 83-93.[Abstract/Free Full Text]

Morata, G. and Lawrence, P. A (1975). Control of compartment development by the engrailed gene in Drosophila. Nature 255, 614-7.[Medline]

Morrissey, D., Askew, D., Raj, L. and Weir, M (1991). Functional dissection of the paired segmentation gene in Drosophila embryos. Genes Dev 5, 1684-96.[Abstract/Free Full Text]

Mullen, J. R. and DiNardo, S (1995). Establishing parasegments in Drosophila embryos: roles of the odd-skipped and naked genes. Dev. Biol 169, 295-308.[Medline]

Nusslein-Volhard, C. and Wieschaus, E (1980). Mutations affecting segment number and polarity in Drosophila. Nature 287, 795-801.[Medline]

Pankratz, M. J., Seifert, E., Gerwin, N., Billi, B., Nauber, U. and Jackle, H (1990). Gradients of Kruppel and knirps gene products direct pair-rule gene stripe patterning in the posterior region of the Drosophila embryo. Cell 61, 309-17.[Medline]

Perrimon, N., Engstrom, L. and Mahowald, A. P (1989). Zygotic lethals with specific maternal effect phenotypes in Drosophila melanogaster. I. Loci on the X chromosome. Genetics 121, 333-52.[Abstract/Free Full Text]

Pick, L., Schier, A., Affolter, M., Schmidt-Glenewinkel, T. and Gehring, W. J (1990). Analysis of the ftz upstream element: germ layer-specific enhancers are independently autoregulated. Genes Dev 4, 1224-39.[Abstract/Free Full Text]

Poole, S. J., Kauvar, L. M., Drees, B. and Kornberg, T (1985). The engrailed locus of Drosophila: structural analysis of an embryonic transcript. Cell 40, 37-43.[Medline]

Reichardt, H. M., Kaestner, K. H., Tuckermann, J., Kretz, O., Wessely, O., Bock, R., Gass, P., Schmid, W., Herrlich, P., Angel, P. and Schutz, G (1998). DNA binding of the glucocorticoid receptor is not essential for survival [see comments]. Cell 93, 531-41.[Medline]

Rivera-Pomar, R. and Jackle, H (1996). From gradients to stripes in Drosophila embryogenesis: filling in the gaps. Trends Genet 12, 478-83.[Medline]

Saulier-Le Drean, B., Nasiadka, A., Dong J. and Krause, H (1998). Dynamic changes in the functions of odd-skipped during early Drosophila embryogenesis. Development 125, 4851-4861.[Abstract]

Saavedra, C., Tung, K. S., Amberg, D. C., Hopper, A. K. and Cole, C. N (1996). Regulation of mRNA export in response to stress in Saccharomyces cerevisiae. Genes Dev 10, 1608-20.[Abstract/Free Full Text]

Schier, A. F. and Gehring, W. J (1992). Direct homeodomain-DNA interaction in the autoregulation of the fushi tarazu gene. Nature 356, 804-7.[Medline]

Schier, A. F. and Gehring, W. J (1993). Analysis of a fushi tarazu autoregulatory element: multiple sequence elements contribute to enhancer activity. EMBO J 12, 1111-9.[Medline]

Shivdasani, R. A. and Orkin, S. H (1996). The transcriptional control of hematopoiesis [see comments]. Blood 87, 4025-39.[Free Full Text]

St Johnston, D. and Nusslein-Volhard, C (1992). The origin of pattern and polarity in the Drosophila embryo. Cell 68, 201-19.[Medline]

Struhl, G (1985). Near-reciprocal phenotypes caused by inactivation or indiscriminate expression of the Drosophila segmentation gene ftz. Nature 318, 677-80.[Medline]

Tautz, D (1992). Redundancies, development and the flow of information. BioEssays 14, 263-6.[Medline]

Thummel, C. S (1996). Files on steroids\321Drosophila metamorphosis and the mechanisms of steroid hormone action. Trends Genet 12, 306-10.[Medline]

Urness, L. D. and Thummel, C. S (1990). Molecular interactions within the ecdysone regulatory hierarchy: DNA binding properties of the Drosophila ecdysone-inducible E74A protein. Cell 63, 47-61.[Medline]

Wakimoto, B. T. and Kaufman, T. C (1981). Analysis of larval segmentation in lethal genotypes associated with the antennapedia gene complex in Drosophila melanogaster. Dev. Biol 81, 51-64.[Medline]

Wakimoto, B. T., Turner, F. R. and Kaufman, T. C (1984). Defects in embryogenesis in mutants associated with the antennapedia gene complex of Drosophila melanogaster. Dev. Biol 102, 147-72.[Medline]

Walter, J., Dever, C. A. and Biggin, M. D (1994). Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos. Genes Dev 8, 1678-92.[Abstract/Free Full Text]

Yost, H. J. and Lindquist, S (1986). RNA splicing is interrupted by heat shock and is rescued by heat shock protein synthesis. Cell 45, 185-93.[Medline]

Yu, Y., Li, W., Su, K., Yussa, M., Han, W., Perrimon, N. and Pick, L (1997). The nuclear hormone receptor Ftz-F1 is a cofactor for the Drosophila homeodomain protein Ftz. Nature 385, 552-5.[Medline]

Zink, B. and Paro, R (1989). In vivo binding pattern of a trans-regulator of homoeotic genes in Drosophila melanogaster. Nature 337, 468-71.[Medline]

This article has been cited by other articles:

M. W. Kankel, D. M. Duncan, and I. Duncan
A Screen for Genes That Interact With the Drosophila Pair-Rule Segmentation Gene fushi tarazu
Genetics, September 1, 2004; 168(1): 161 - 180.
[Abstract] [Full Text] [PDF]

A. P. Lifanov, V. J. Makeev, A. G. Nazina, and D. A. Papatsenko
Homotypic Regulatory Clusters in Drosophila
Genome Res., April 1, 2003; 13(4): 579 - 588.
[Abstract] [Full Text] [PDF]

L. R. Baugh, A. A. Hill, D. K. Slonim, E. L. Brown, and C. P. Hunter
Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome
Development, March 1, 2003; 130(5): 889 - 900.
[Abstract] [Full Text] [PDF]

C. Alexandre and J.-P. Vincent
Requirements for transcriptional repression and activation by Engrailed in Drosophila embryos
Development, February 15, 2003; 130(4): 729 - 739.
[Abstract] [Full Text] [PDF]

P. K. Dearden, C. Donly, and M. Grbic
Expression of pair-rule gene homologues in a chelicerate: early patterning of the two-spotted spider mite Tetranychus urticae
Development, January 12, 2002; 129(23): 5461 - 5472.
[Abstract] [Full Text] [PDF]

S. Hughes and H. Krause
Establishment and maintenance of parasegmental compartments
Development, January 4, 2001; 128(7): 1109 - 1118.
[Abstract] [PDF]

A Nasiadka, A Grill, and H. Krause
Mechanisms regulating target gene selection by the homeodomain-containing protein Fushi tarazu
Development, January 7, 2000; 127(13): 2965 - 2976.
[Abstract] [PDF]

This Article

Summary

Full Text (PDF)

Alert me when this article is cited

Alert me if a correction is posted

Services

Email this article to a friend

Similar articles in this journal

Similar articles in PubMed

Alert me to new issues of the journal

Download to citation manager

Citing Articles

Citing Articles via HighWire

Citing Articles via Google Scholar

Google Scholar

Articles by Nasiadka, A.

Articles by Krause, H. M.

Search for Related Content

PubMed

PubMed Citation

Articles by Nasiadka, A.

Articles by Krause, H. M.

				A. P. Lifanov, V. J. Makeev, A. G. Nazina, and D. A. Papatsenko Homotypic Regulatory Clusters in Drosophila Genome Res., April 1, 2003; 13(4): 579 - 588. [Abstract] [Full Text] [PDF]

				L. R. Baugh, A. A. Hill, D. K. Slonim, E. L. Brown, and C. P. Hunter Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome Development, March 1, 2003; 130(5): 889 - 900. [Abstract] [Full Text] [PDF]

				C. Alexandre and J.-P. Vincent Requirements for transcriptional repression and activation by Engrailed in Drosophila embryos Development, February 15, 2003; 130(4): 729 - 739. [Abstract] [Full Text] [PDF]

				P. K. Dearden, C. Donly, and M. Grbic Expression of pair-rule gene homologues in a chelicerate: early patterning of the two-spotted spider mite Tetranychus urticae Development, January 12, 2002; 129(23): 5461 - 5472. [Abstract] [Full Text] [PDF]

				S. Hughes and H. Krause Establishment and maintenance of parasegmental compartments Development, January 4, 2001; 128(7): 1109 - 1118. [Abstract] [PDF]

				A Nasiadka, A Grill, and H. Krause Mechanisms regulating target gene selection by the homeodomain-containing protein Fushi tarazu Development, January 7, 2000; 127(13): 2965 - 2976. [Abstract] [PDF]