Morpholinos for splice modificatio

Morpholinos for splice modification


The differentiation and movement of presomitic mesoderm progenitor cells are controlled by Mesogenin 1
Rita Fior, Adrienne A. Maxwell, Taylur P. Ma, Annalisa Vezzaro, Cecilia B. Moens, Sharon L. Amacher, Julian Lewis, Leonor Saúde


Somites are formed from the presomitic mesoderm (PSM) and give rise to the axial skeleton and skeletal muscles. The PSM is dynamic; somites are generated at the anterior end, while the posterior end is continually renewed with new cells entering from the tailbud progenitor region. Which genes control the conversion of tailbud progenitors into PSM and how is this process coordinated with cell movement? Using loss- and gain-of-function experiments and heat-shock transgenics we show in zebrafish that the transcription factor Mesogenin 1 (Msgn1), acting with Spadetail (Spt), has a central role. Msgn1 allows progression of the PSM differentiation program by switching off the progenitor maintenance genes ntl, wnt3a, wnt8 and fgf8 in the future PSM cells as they exit from the tailbud, and subsequently induces expression of PSM markers such as tbx24. msgn1 is itself positively regulated by Ntl/Wnt/Fgf, creating a negative-feedback loop that might be crucial to regulate homeostasis of the progenitor population until somitogenesis ends. Msgn1 drives not only the changes in gene expression in the nascent PSM cells but also the movements by which they stream out of the tailbud into the PSM. Loss of Msgn1 reduces the flux of cells out of the tailbud, producing smaller somites and an enlarged tailbud, and, by delaying exhaustion of the progenitor population, results in supernumerary tail somites. Through its combined effects on gene expression and cell movement, Msgn1 (with Spt) plays a key role both in genesis of the paraxial mesoderm and in maintenance of the progenitor population from which it derives.


The axial skeleton and skeletal muscles arise from the somites. As somites form from the anterior end of the presomitic mesoderm (PSM), mesoderm progenitors in the tailbud continually generate new mesoderm cells and feed them into the posterior PSM (Holley, 2007). The number of progenitors and the rate at which their progeny differentiate and move from the tailbud into the PSM must be controlled to ensure that the correct somite number is reached. Premature exhaustion of progenitors results in premature extinction of the PSM, a deficit of posterior somites, and therefore a truncated body.

Several mouse mutants with a truncated axis have been described and all but one result from lack of mesoderm (Wilson et al., 2009). The one exception carries a null mutation in the bHLH transcription factor mesogenin 1 (Msgn1). It lacks thoracic, lumbar and sacral vertebrae and skeletal muscles (Yoon and Wold, 2000), but there is no lack of mesoderm progenitors – quite the opposite: the lack of PSM tissue is accompanied by an enlarged tailbud containing an excess of cells expressing brachyury – a mesodermal progenitor marker. This suggests that in the absence of Msgn1, mesoderm progenitors that should normally emerge to become PSM remain instead in the tailbud. What, then, is the precise function of Msgn1? Do the brachyury-expressing progenitors remain in the tailbud because of a block in differentiation, cell migration, or both? To investigate this question, we characterised Msgn1 function through loss- and gain-of-function experiments combined with live imaging in zebrafish.

In zebrafish, msgn1 is expressed in a domain similar to that in mouse (Yoo et al., 2003), but its function has not been described. However, the zebrafish spadetail (spt, now termed tbx16) mutant, like mouse Msgn1 mutants, shows a large accumulation of cells expressing the brachyury-like gene no tail (ntl) in the tailbud (Griffin et al., 1998; Griffin and Kimelman, 2002). It has been proposed that Spt promotes the differentiation of tailbud progenitors by inhibiting the progenitor maintenance genes ntl and Wnt (Griffin and Kimelman, 2002; Martin and Kimelman, 2008). Spt also controls cell movement during gastrulation (Ho and Kane, 1990; Kimmel et al., 1989; Row et al., 2011), suggesting that Spt might also control motility in the tailbud. However, Spt cannot be the only factor regulating the transition of tailbud progenitors into PSM because spt null mutants still form tail somites (Griffen et al., 1998). Msgn1 is thus a candidate additional factor in zebrafish responsible for the switch from a tailbud progenitor state to a PSM state.

We show that combined loss of msgn1 and spt leads to complete failure of trunk and tail somite formation accompanied by a large excess of ntl-expressing cells in the tailbud. Using a heat shock-inducible transgenic line, we find that a pulse of msgn1 expression causes a rapid downregulation of ntl and wnt8, indicating that these two genes, which work in an intricate positive-feedback loop with each other, are themselves negatively regulated by Msgn1. This Msgn1-induced downregulation of ntl and wnt8 expression is followed by ectopic activation of an intermediate/anterior PSM marker, tbx24 (also known as fss and now termed tbx6), in the tailbud, consistent with the idea that Msgn1 throws a switch that converts cells from a tailbud progenitor state into a PSM state. msgn1 expression is itself positively regulated by the ntl, Wnt and Fgf mesoderm progenitor maintenance genes (Griffin and Kimelman, 2002; Goering et al., 2003; Wittler et al., 2007; Wang et al., 2007; Morley et al., 2009; Garnett et al., 2009) (our data), which, by activating msgn1 in a subset of the tailbud cell population, evidently trigger these cells to embark on the PSM differentiation pathway. We show that Msgn1 drives not only the differentiation but also the migration of such cells out of the tailbud into the PSM region. By governing the flux of cells from the progenitor region into the PSM, Msgn1 helps control both the size of somites and the size and persistence of the progenitor cell population; loss of Msgn1 activity thus gives rise to additional tail somites.


Zebrafish lines and heat-shock experiments

Zebrafish lines: msgn1fh273 [a mutant found by screening ENU-mutagenised F1 fish (Draper et al., 2004)]; sptb104 (Kimmel et al., 1989); ntlb195 (Halpern et al., 1993); hsp70:dkk1-GFPw32 (Stoick-Cooper et al., 2007); and hsp70:dnfgfr1-EGFPpd1 (Lee et al., 2005).

For all heat-shock experiments, embryos were raised at 25°C and heat shocked at 39°C for the indicated time. hsp70:HA-msgn1, hsp70:dkk1-GFP and hsp70:dnfgfr1-EGFP embryos were generated from a cross between transgenic heterozygous and wild-type fish, giving batches with an expected mean ratio of 50% transgenics to 50% wild-type siblings. hsp70:HA-msgn1 embryos were sorted into distinct phenotypic classes after in situ hybridisation (confirmed by genotyping) and hsp70:dkk1-GFP and hsp70:dnfgfr1-EGFP embryos were sorted by GFP expression.

DNA constructs

msgn1 cDNA was amplified from a zebrafish EST (IMAGE:7286125) with primers (5′-3′) pFWEcoRI (CCGGAATTCATGGCGCAAATCG - ACGTGGATG) and pRXbaI (CTAGTCTAGATCACTGCTGC - TCGAGGATGCC) and cloned into the EcoRI and XbaI sites of pCS2+, and NotI/SP6 was used to produce msgn1 poly(A)-capped RNA and ClaI/T7 to produce an antisense RNA probe.

The hsp70:HA-msgn1 transgenic was created by placing msgn1 cDNA containing an N-terminal HA tag downstream of the hsp70 heat-shock promoter in the pT2 vector (UAS-hsp70p-polyA-β-crystallin promoter-CFP) using primers pFW-HA-ClaI-Kozak (CCATCGATGGCCACC - ATGGCTTCATATCCTTACGATG) and pRStuI (AAAAGGCCTTTTTC - ACTGCTGCTCGAGGATGCC).

The nuclear localisation sequence (Nls)-tagged Kaede was generated by PCR. The first PCR was performed to add a BamHI site and Kozak sequence to the 5′ end and part of the Nls and a linker sequence at the 3′ end of Kaede, using primers pFW1 (ATACGCGGATCCGCC GCCGC CATGAG - TCTGATTAAACCAGAAAATG) and pR1 (CTTTTCTT TTCTTTTTT - GGAGAACCCTTGACGTTGTCCGGCAATCC). The second PCR was performed to add an EcoRI site and the rest of the Nls sequence at 3′ end of Kaede, using primers: pFW1 and pR2 (TATCCGGAATTCTTAGTCAA - CTTTTCTTTTCTTTTTTGGAGA). The resulting PCR product was cloned into the BamHI and EcoRI sites of pCS2+ and NotI/SP6 was used to produce Nls-Kaede poly(A)-capped RNA.


msgn1 morpholino (CATGGCGCAAATCGACGTGGATGTG) and a standard control morpholino (CCTCTTACCTCAGTTACAATTTATA) from Gene Tools were injected at 5.7 ng/embryo at the one-cell stage; 100 pg msgn1, Nls-Kaede and Kaede mRNAs were injected at the one-cell stage; the DNA plasmids hsp70:ntl and hsp70:caβcatenin (Martin and Kimelman, 2012) were injected at 30 pg/embryo at the one-cell stage.

In situ hybridisation and immunohistochemistry

Single whole-mount in situ hybridisations were performed as described (Thisse and Thisse, 2008). Double whole-mount fluorescent in situ hybridisations were performed as described (Jülich et al., 2005) with modifications: the red signal was developed with Fast Red (alkaline phosphatase substrate, Roche) and the green signal with tyramide-FITC (horseradish peroxidase substrate, PerkinElmer TSA Plus Fluorescein System). For HA immunohistochemistry, embryos were fixed for 2 hours in 4% paraformaldehyde, incubated with a monoclonal rat anti-HA antibody (3F10, Roche) followed by anti-rat DyLight 488 secondary antibody (Rockland). F-actin and nuclei were detected with Alexa Fluor 488-Phalloidin (Molecular Probes) and DAPI, respectively.

Kaede time-lapse microscopy

Kaede- and Nls-Kaede mRNA-injected embryos were kept in the dark. Eight-somite stage embryos were mounted in 1.2% low-melting agarose in glass-bottom Petri dishes. Small groups of cells were labelled by photoconversion in the maturation zone (25 μm posterior to the end of the notochord and in the focal plane of notochord and adaxial cells) and in the PSM (see Fig. 6H), with a 405 nm laser in a Zeiss 510 META confocal microscope using a 20× objective. Embryos were imaged in an Andor RevolutionXD spinning disc confocal microscope at 25°C. Stacks of 50 optical sections, spaced by 1 μm, were collected every 180 or 213 seconds for up to 2 hours.

Cell track analysis and measurements

Time-lapse movies were analysed using ImageJ software (NIH). Individual cells were tracked using the MtrackJ plug-in. The diving velocity and the anteroposterior (A/P) velocity were measured by following cells over an extended period of time (generally 60 minutes or more), and were calculated as (zfinal–zinitial)/(tfinal–tinitial) and (yfinal–yinitial)/(tfinal–tinitial), where z and y denote positions along the superficial/deep (dorsoventral) and A/P axes, respectively. The centre-to-centre distance between dot-2 and dot-3 was 109±5 μm (mean ± s.d.) – the same within narrow limits for all sets of embryos analysed. The mean A/P velocity of dot-3 cells was subtracted from the A/P velocity of dot-2 cells to obtain the A/P velocity (Vap) of dot-2 relative to dot-3 cells. Statistical significance of differences between genotypes was calculated using unpaired two-tailed Student’s t-test.


Depletion of msgn1 and spt leads to complete loss of trunk and tail somites

To uncover the role of msgn1 in zebrafish, we examined the embryonic phenotype in loss-of-function experiments using a translation-blocking morpholino (msgn1MO) (supplementary material Fig. S1A). msgn1MO-injected embryos showed increased ntl expression in the tailbud when compared with control siblings (Fig. 1A′,B′), as does the mouse Msgn1 mutant (Yoon and Wold, 2000). However, somites formed in zebrafish msgn1 morphants (Fig. 1B′,B″), in contrast to the mouse mutant, in which somite formation is abolished. To validate the msgn1 knockdown, we analysed a zebrafish msgn1 nonsense mutant allele, msgn1fh273 (supplementary material Fig. S1B). Homozygous msgn1fh273 mutants are viable and have a phenotype indistinguishable from that of the msgn1 morphants (compare Fig. 1B-B″ with 1F-F″). The mildness of the msgn1fh273 phenotype is not due to a maternal contribution, as no maternal msgn1 mRNA was detected either by in situ hybridisation or by RT-PCR and maternal-zygotic and zygotic msgn1fh273 mutants had indistinguishable embryonic phenotypes (data not shown). Another possible explanation for the mildness of the phenotype is a second Msgn gene, which is not unlikely given the genome duplication event in teleosts. However, we could not find any evidence for such a gene duplication.

Fig. 1.

Msgn1 and Spt are essential for tail somite formation. (A-D,E-H) Live zebrafish embryos typical of their genotypic classes. (A′-D″′,E′-H″′′) In situ hybridisation for ntl and cb1045 (xirp2a), myoD (myod1), tbx24 and mespaa expression in uninjected wild-type (wt) siblings and in the genotypes indicated. spt–/– mutants were derived from a heterozygous spt+/– cross. msgn1–/– mutants, spt+/–;msgn1–/– mutants and spt–/–;msgn1–/– double mutants were derived from a double heterozygous msgn1+/–;spt+/– cross. Indicated is the number of embryos (n) observed with the phenotype shown in each panel, and when embryos were derived from mutant crosses the obtained n corresponded to the expected frequencies for each genotype. Asterisk indicates that wt and msgn1 mutants have an undistinguishable phenotype at the 14-somite stage.

The enlarged population of ntl-expressing tailbud cells in msgn1 morphants and mutants is similar to that seen in spt mutants, although less severe (Fig. 1C′) (Griffin and Kimelman, 2002). To test the hypothesis that Msgn1 and Spt function collaboratively, we injected msgn1MO into embryos derived from a cross of spt heterozygotes and we also generated msgn1–/–;spt–/– double mutants. In both cases, the combined loss of Msgn1 and Spt led to a complete failure of trunk and tail somite formation along with a greatly enlarged tailbud that was full of ntl-expressing cells (Fig. 1D′,H′). This severe phenotype is very similar to that described for the Msgn1 mouse mutant and strongly suggests that cells that should have emerged to form PSM remained instead in the tailbud progenitor region in an immature state. As further evidence of a shared function of msgn1 and spt, loss of one copy of spt in an msgn1 mutant or morphant background led to an enhanced msgn1 phenotype (Fig. 1G-G″′′; data not shown).

In wild-type embryos, the intermediate/anterior PSM is marked by expression of tbx24 throughout somitogenesis; in spt–/– single mutants, tbx24 expression is initially defective but is restored around the 14-somite stage, correlating with the recovery of somitogenesis at this stage in these mutants (Griffin and Kimelman, 2002) (Fig. 1C″′). By contrast, the combined absence of Msgn1 and Spt leads to a sustained loss of expression of tbx24 (Fig. 1D″′,H″′) and mespaa (Fig. 1H″′′), suggesting that embryos lacking Msgn1 and Spt function fail to generate somites because their cells are unable to progress along the PSM differentiation pathway.

Our data reveal a PSM formation program that differs between zebrafish and mouse. In the mouse, Msgn1 is required for both trunk and tail somite formation, but in zebrafish Spt is required for trunk somite formation and Msgn1 is not, whereas tail somite formation depends on both Msgn1 and Spt. To establish whether Msgn1 has a similar genetic relationship with Ntl during somitogenesis, we generated msgn1–/–;ntl–/– double mutants; these did not display any enhancement of the ntl phenotype, suggesting that Msgn1 works downstream of Ntl and not in parallel to it (supplementary material Fig. S2).

Msgn1 regulates the transition from the tailbud maturation zone to the PSM

To determine the step of the PSM differentiation pathway at which Msgn1 acts, we analysed the msgn1 morphant phenotype and compared this with the phenotype obtained when msgn1 was overexpressed.

During normal development, mesoderm progenitors located in the dorsal tailbud region, which is known as the progenitor zone (PZ), express ntl and wnt8 (Griffin and Kimelman, 2002) (Fig. 2A, dorsal view). The progeny of these cells that are destined to become PSM move ventrally to enter a so-called maturation zone (MZ), where they express msgn1, spt and tbx6l, in addition to ntl (Kanki and Ho, 1997; Griffin and Kimelman, 2002) (Fig. 2A ventral view, 2B-B″). When cells reach the posterior PSM, they downregulate ntl expression but maintain expression of msgn1, spt and tbx6l (Griffin and Kimelman, 2002; Amacher et al., 2002). A little later still, as cells become displaced from the posterior to the intermediate PSM, they start to express tbx24 and will continue to do so until the somite border is completed (Nikaido et al., 2002) (Fig. 2A).

Fig. 2.

Msgn1 regulates the transition from the maturation zone to the PSM. (A) Diagram of sequential gene expression as a mesodermal cell progresses from a progenitor state in the dorsal superficial tailbud until incorporation into a somite. (B-B″) Double fluorescent in situ hybridisation for msgn1 (red) and ntl (green) in a wt zebrafish embryo. (C-J′) Expression of ntl (C-H′) and wnt8 (E-J′) in msgn1MO-injected embryos (D,D′,F,F′) and their siblings (C,C′,E,E′) and in embryos overexpressing msgn1 (H,H′,J,J′) and their siblings (G,G′,I,I′). At the 8- to 10-somite stage (H), 55% of msgn1-overexpressing embryos showed an absence of notochord ntl staining and 33% presented notochord breaks, but some expression of ntl was still evident in the tailbud. At the 20-somite stage (H′), 88% of these embryos showed an absence of ntl staining in the tailbud; this 88% consisted of 66% that showed no notochordal ntl expression and 22% that showed some notochord staining. In both H and H′, 12% of the injected embryos appeared wt. Seventy per cent of msgn1OE embryos showed continuing but strongly downregulated wnt8 staining at the 8- to 10-somite stage (J); the remaining 30% exhibited a total absence of wnt8 expression. By the 20-somite stage (J′), expression of wnt8 had disappeared completely. (K-L′) Confocal images of double fluorescent in situ hybridisation showing expression of ntl (green) and tbx6l (red) in a msgn1MO-injected embryo (L,L′) and an uninjected sibling (K,K′) at the 8- to 10-somite stage, in the superficial dorsal progenitor region (K,L) and at the level of the notochord, where ntl and tbx6l expression overlap (K′,L′). (M,N) Expression of tbx24 in a msgn1 mRNA-injected embryo (N) and its sibling control (M) at the 8- to 10-somite stage.

In msgn1 morphants, the tailbud domain marked by ntl and wnt8 was clearly expanded in comparison with control siblings (Fig. 2C-F′). Conversely, when msgn1 was overexpressed by mRNA injection at the one-cell stage, expression of ntl and wnt8 was severely reduced and lost prematurely (Fig. 2G-J′), followed later by a severely truncated tailbud (supplementary material Fig. S3I,J). Strikingly, msgn1 overexpression led also to loss of the notochord as seen both by morphology and loss of midline ntl expression (Fig. 2H,H′; supplementary material Fig. S3L).

Double fluorescent in situ hybridisation for ntl and tbx6l showed that the tailbud PZ (identified by the expression of ntl but not tbx6l) and the MZ (located more deeply and identified by ntl and tbx6l co-expression) were both expanded in the absence of Msgn1 (Fig. 2K-L′). These data suggest that in the absence of Msgn1 there is a reduction both in the flux of cells from the PZ state into the MZ state and in the flux from the MZ state into a PSM state: tailbud progenitors fail to progress normally through the PSM differentiation program. Consistent with this idea, when msgn1 was overexpressed, the converse effect was seen: expression of tbx24 was ectopically activated in the tailbud region (Fig. 2N), suggesting premature differentiation of mesoderm progenitors.

Msgn1 inhibits the Wnt/Ntl/Fgf loop and promotes progression along the PSM differentiation pathway

To clarify the dynamics of the regulatory interactions among msgn1, the tailbud progenitor marker genes wnt3a, wnt8, ntl and fgf8, and the PSM-specific genes tbx24 and tbx6l, we created a zebrafish line containing a heat shock-inducible HA-tagged msgn1 transgene (hsp70:HA-msgn1) that allowed us to activate msgn1 in a time-controlled manner (supplementary material Fig. S4A-K′).

hsp70:HA-msgn1 transgenics were heat shocked during segmentation, at a stage corresponding to the time when cells located in the tailbud are fated to contribute to trunk (supplementary material Fig. S4L-N′) or tail somites (Fig. 3). We observed a consistent and marked reduction of the levels of ntl and wnt8, and, to a lesser extent, of wnt3a and fgf8, in the tailbud of the hsp70:HA-msgn1 transgenics as early as 1 hour post-heat shock (hpHS) (Fig. 3A-D′), suggesting that these genes are direct downstream targets of Msgn1. The effect was most rapid and striking for ntl, which was almost completely undetectable, whereas tailbud expression of wnt3a, wnt8 and fgf8 persisted at a reduced level for longer, but disappeared completely by 7 hpHS (Fig. 3H-J′).

Fig. 3.

A heat shock-driven pulse of Msgn1 inhibits expression of progenitor-specific genes and drives progression through the PSM differentiation program. Batches of zebrafish embryos comprising heat shocked hsp70:HA-msgn1 transgenics along with wt sibling controls were analysed; ∼50% of each batch showed a clear phenotype and were presumed to be the transgenics. (A-D′) Expression of ntl, wnt8, wnt3a and fgf8 after 1 hour of recovery post-heat shock (hpHS) in hsp70:HA-msgn1 embryos (A′-D′) and their wt siblings (A-D) heat shocked for 1 hour at the 13-somite stage. In the transgenics (32/59 embryos), tailbud expression of ntl was severely reduced (29/59 embryos) or totally eliminated (3/59 embryos). Tailbud expression of wnt8 in the transgenics (35/65 embryos) was also strongly reduced, but reduction in expression levels of wnt3a and fgf8 at this early time after heat shock was milder, making transgenics often hard to distinguish from sibling controls. (E,E′) tbx24 expression at 2 hpHS. In the hsp70:HA-msgn1 transgenics (29/76 embryos), tbx24 expression is intensified in the PSM and abnormally extended into the region of formed somites, but is still absent from the tailbud. (F,F′) fgf8 expression at 2 hpHS. In the hsp70:HA-msgn1 transgenics (10/23 embryos), fgf8 is downregulated but still detectable. (G-M′) Expression of ntl, wnt8, wnt3a, fgf8, tbx24 and tbx6l at 7 hpHS. In the hsp70:HA-msgn1 transgenics (G′, n=25/53; H′, n=46/92; I′, n=13/29; J′, n=32/66; K′, n=15/34; M′, n=10/22), the tailbud has now lost all expression of ntl, wnt3, wnt8 and fgf8 and instead expresses tbx24 and tbx6I. Asterisks, arrowhead and hash sign indicate ectopic expression of tbx24 in somites, tailbud and midline, respectively.

Interestingly, in embryos fixed 7 hpHS, tailbud expression of msgn1 itself was downregulated (supplementary material Fig. S4E′), suggesting that Msgn1 exerts a delayed negative feedback on its own expression. This is probably mediated through ntl, Wnt and/or Fgf genes: whereas Msgn1 has an inhibitory action on this set of genes, they themselves are known to be required for msgn1 expression, not only during gastrulation (Griffin and Kimelman, 2002; Goering et al., 2003; Morley et al., 2009) but also during segmentation/tailbud stages (supplementary material Fig. S5C-F′). Moreover, this is consistent with the subtle but distinct expansion of msgn1 mRNA expression in msgn1 loss-of-function mutants (supplementary material Fig. S5A,A′).

Further insight into Msgn1 function comes from the timecourse of expression of tbx24 after ectopic activation of Msgn1 expression, which is normally restricted to the intermediate/anterior PSM region (Fig. 3E,K,L). At 2 hpHS, tbx24 expression was enhanced in its normal domain and was ectopically induced in the somites (Fig. 3E′). Strikingly, at 7 hpHS, we could detect tbx24 expression also in the tailbud and midline of hsp70:HA-msgn1 transgenics (Fig. 3K′); this expanded expression coincided with the time at which tailbud expression of ntl, wnt8, wnt3a and fgf8 was completely abolished (Fig. 3G′-J′). The implication is that, in normal development, Msgn1 drives cells along the pathway of PSM differentiation, but that the progression to an intermediate/anterior PSM state depends on escape from the influence of Ntl/Wnt/Fgf. This conclusion is further supported by our finding that, when Wnt signalling was transiently inhibited in hsp70:dkk1 embryos, a posterior expansion of tbx24 expression was indeed observed (Fig. 4).

Fig. 4.

Transient inhibition of Wnt signalling by Dkk1 allows ectopic activation of tbx24 in the most posterior region of the PSM. Batches of zebrafish embryos comprising heat shocked hsp70:dkk1 transgenics along with wt sibling controls were analysed. tbx24 expression is shown at 4 hours of recovery after a 30-minute heat shock at the 13-somite stage, in lateral (left of each pair) and flatmount dorsal (right of each pair) views. Arrowhead indicates a posterior expansion into the tailbud of tbx24 expression; bracket highlights the reduction of the tailbud region.

Msgn1 controls the movements of mesoderm progenitor cells

As described above, our data showed that, in the absence of Msgn1, mesoderm progenitors accumulate in the tailbud, potentially reflecting a reduced flux of cells from this region into the PSM. This suggested that Msgn1 could be responsible for driving the cell movements that accompany differentiation along the PSM pathway. To test this, we used the Kaede photoconvertible fluorescent protein (Sato et al., 2006) to label small groups of cells in the tailbud region and to follow their movements, comparing normal control embryos with embryos with altered levels of Msgn1 (Fig. 5). We targeted our labelling on a plane at the level of the msgn1-expressing superficial layer of the MZ (at the same dorsoventral level as the notochord and adaxial cells).

Fig. 5.

Msgn1 controls cell movements in the neighbourhood of the tailbud. (A) An 8-somite stage Kaede-injected zebrafish embryo with a patch of tailbud cells freshly photoactivated (red), imaged in the plane of the notochord and adaxial cells [i.e. in the superficial layer of the maturation zone (MZ)]. (B-C″) Dispersion of the photoactivated tailbud cells imaged in this plane in controlMO (B-B″, Movie 1) and msgn1MO (C-C″, Movie 3) morphants. (E) An 8-somite stage embryo with photoactivated tailbud cells (red) imaged in a deeper layer, ∼20 μm ventral to the notochord and adaxial cells (i.e. in a deep layer of the MZ). (F-G″) Dispersion of the photoactivated tailbud cells imaged in this plane in controlMO (F-F″, Movie 2) and msgn1MO (G-G″, Movie 4) morphants. (D,H) z-position of individual Kaede photoactivated tailbud cells tracked over time in controlMO (D) and msgn1MO (H) morphants. Each colour represents an individual cell. Loss of msgn1 leads to failure of ventral diving and of the subsequent lateral dispersion. Scale bars: 50 μm.

In agreement with a previous report (Kanki and Ho, 1997), we observed that in controlMO-injected embryos, the marked cells dived from the superficial layer of the MZ into deeper layers (Fig. 5B-B″; supplementary material Movie 1) (i.e. along the z-axis of the confocal image stack) and then moved laterally into the PSM, avoiding the midline; once they reached the posterior PSM, they were displaced along the anteroposterior (A/P) axis as the embryo elongated (Fig. 5F-F″; supplementary material Movie 2).

In clear contrast to controlMO-injected embryos, ventral diving was markedly impaired in the absence of Msgn1 (Fig. 5C-C″; supplementary material Movie 3). Labelled cells located in the superficial layer of the MZ remained in the same z-focal plane for much longer in the absence of Msgn1 (compare Fig. 5D with 5H). We quantified this effect by tracking individual cells over a prolonged period (on average, 60 minutes) and calculated their mean diving velocity – that is, their net z-displacement divided by the period of observation. In controlMO-injected embryos, the mean diving velocity was 0.328 μm/minute (s.d.=0.21, n=39 cells/7 embryos). By contrast, in msgnMO-injected embryos, the mean diving velocity was only 0.001 μm/minute (s.d.=0.1, n=43 cells/7 embryos), significantly different from controls (t-test, P<10–10). These results show that msgn1 is required for the ventral diving of tailbud cells.

Msgn1-regulated cell movement may be mediated through negative regulation of snail1a

We next investigated how Msgn1 might control cell movements. The ventral diving of tailbud cells can be compared to the internalisation of germ ring cells during gastrulation, where an epithelial-to-mesenchymal (EMT)-like transition takes place (Marlow et al., 2004; Solnica-Krezel, 2006). We hypothesized that Msgn1 might regulate these EMT-like movements of tailbud cells during segmentation by regulating Snail expression or activity, as the Snail transcription factor family plays a role in EMT initiation in several contexts (Nieto, 2002). We investigated the expression of snail1a (also known as snai1a) – the only member of the zebrafish Snail family that is expressed in the tailbud (Blanco et al., 2007). During normal development, snail1a is strongly expressed in the MZ and fades in the PSM in a pattern that is largely complementary to, and non-overlapping with, that of msgn1 (Fig. 6A-A″). We found that, in the absence of msgn1, snail1a expression was upregulated and expanded anteriorly (Fig. 6D,E); a similar expansion has been reported in spt mutants (Thisse et al., 1993). Conversely, when msgn1 was overexpressed by a short heat shock during segmentation, snail1a expression was severely and quickly downregulated 1 hpHS (Fig. 6G).

Fig. 6.

Msgn1 regulates snail1a expression. (A-A″) Double fluorescent in situ hybridisation for msgn1 (red) and snail1a (green) in a 10-somite stage wt zebrafish embryo, as seen in confocal section. (B-E) Expression of snail1a is increased in msgn1MO morphants (D,E) compared with sibling controls (B,C). (F,G) Expression of snail1a is decreased in hsp70:HA-msgn1 embryos (G) compared with sibling controls (F) at 1 hpHS. (H) An 8-somite stage Kaede-injected embryo with freshly photoactivated cells (red) in the superficial layer of the MZ (region 1), in the posterior PSM (region 2), and in the anterior PSM (region 3). (I) z-position of individual cells photoactivated in region 1 in snail1aMO morphants, tracked over time. Each colour represents an individual cell. Compare with Fig. 5D,H. (J) Mean ventral diving velocities of cells marked by photoactivation in region 1, comparing wt control, msgn1MO and snail1aMO morphants. Mean ± s.d., ***P<0.0005 versus wt controls (t-test). (K-P′) Still images showing the tracks of posterior and anterior PSM photoactivated cells in wt control (K-L′), msgn1MO-injected (M-N′) and snail1aMO-injected (O-P′) embryos. The boxed regions in K-P are magnified in K′-P′. Scale bar: 50 μm.

Since Msgn1 regulates snail1a expression during segmentation, we investigated the role of Snail1a in the control of tailbud cell movements. We followed Kaede photoconverted tailbud cells in embryos injected with snail1aMO (Blanco et al., 2007), comparing these with controls and with msgn1MO-injected embryos. In the absence of snail1a, the ventral diving movement from the superficial MZ (Fig. 6H, dot-1) was defective: the mean diving velocity was 0.05 μm/minute (s.d.=0.09, n=37 cells/4 embryos), significantly different from controls (t-test, P<10–7) (Fig. 6I,J; supplementary material Movies 5, 6). The similarity between this result and the defective ventral diving observed in msgn1MO-injected embryos (supplementary material Movie 3), in which there is an excess of snail1a expression, suggests that a balanced level of Snail1a – not too much and not too little – is crucial for properly directed ventral diving movements in the MZ.

To further explore the role of msgn1 and snail1a in A/P PSM extension, we marked and tracked Kaede photoconverted cells in the anterior and posterior PSM (Fig. 6H, dot-3 and dot-2). We converted our raw measurements of cell positions as a function of time into mean A/P velocities (Vap) of the dot-2 cells relative to the dot-3 cells, reflecting the rate at which the intervening PSM tissue was extending or contracting along the A/P axis. Our data show that the A/P extension rate is significantly reduced in the absence of Msgn1 [Fig. 6K-L′, Vap controls=0.15±0.05 μm/minute (dot-2 n=26 cells, dot-3 n=22 cells, 3 embryos); supplementary material Movies 7, 8 versus Fig. 6M-N′, Vap msgn1MO=0.06±0.02 μm/minute (dot-2 n=22 cells, dot-3 n=22 cells, 3 embryos); t-test, P=0.007; supplementary material Movies 9, 10] and significantly increased in the absence of Snail1a [Fig. 6O-P′, Vap snail1aMO=0.27±0.05 μm/minute (dot-2 n=31 cells, dot-3 n=37 cells, 4 embryos); t-test, P<10–7; supplementary material Movies 11, 12]. Thus, Msgn1, possibly through Snail1a, controls cell movement not only at the point of origin of the paraxial mesoderm in the tailbud but also subsequently as the PSM cells mature. However, since the phenotype of loss of snail1a is very mild (supplementary material Fig. S6) (Blanco et al., 2007), it is likely that other factors are involved downstream of Msgn1.

Lack of Msgn1 leads to an increase in the number of tail somites accompanied by a reduction in their size

We have shown that, in msgn1 mutants/morphants and in msgn1 mutants lacking one copy of spt, somitogenesis is not blocked but that increased numbers of ntl/wnt8-positive progenitor cells are retained in the tailbud, suggesting that progenitor cells might persist there for an abnormally long time. If so, one might expect that somitogenesis would be prolonged, leading to an increase in the total number of somites produced. To test this, we counted the number of somites formed using the somitic boundary probe cb1045 (now termed xirp2a). Strikingly, in the absence of msgn1 or in the msgn1 enhanced phenotype (msgn1–/–;spt+/–), there was a significant increase in the number of somites formed (Fig. 7A,B,E-I). Whereas wild-type embryos produce on average 31.5 somites (s.d.=0.75, n=33), msgn1–/– mutants make 33 (s.d.=0.54, n=14; t-test, P=0.002) and msgn1–/–;spt+/– mutants make on average 33.8 somites (s.d.=0.8, n=30; t-test, P=0.00001). msgn1 morphants showed a very similar phenotype to msgn1 mutants, with an increase in the average number of somites formed (mean=32.7, s.d.=1.18, n=23; t-test, P=0.006), whereas their wild-type siblings formed on average 31.6 somites (s.d.=0.72, n=23). The additional somites, in all these cases, were tiny and appeared as an extension of somitogenesis at the extreme tail end of the embryo (Fig. 7E-H), reflecting the abnormal persistence of a small population of progenitors there. We also saw effects on the pattern of somites more anteriorly, however: in the absence of msgn1, somites in the trunk and tail regions of the embryo were on average 15% smaller than in wild-type controls (t-test, P=0.002; Fig. 7C,D). This fits with the other indications that cells were being recruited into the PSM from the tailbud at a reduced rate during formation of the trunk and tail somites. To our knowledge, our findings in msgn1 single and msgn1–/–;spt+/– mutants represent the first experimental examples of genetic perturbations that leads to an increase in somite number.

Fig. 7.

Loss of Msgn1 affects somite number and size. Somite numbers and somite size in wt zebrafish embryos (blue and light blue), msgn1–/– single mutants, spt+/–;msgn1–/– double mutants and msgn1MO-injected embryos (colours as indicated in E-I), fixed at 36 hours postfertilisation and measured after staining by in situ hybridisation with cb1045 to show somite boundaries. (A) Distribution of the total number of somites in the different genotypes. The peak of the distribution is at 32 somites for wt, 33 somites for msgn1MO, 33 somites for msgn1–/–, and 34/35 somites for spt+/–;msgn1–/–. (B) The mean (±s.d.) number of somites for each genotype. *P<0.01, **P<0.005, ***P<0.0005, versus wt; t-test. (C) Size of somites as a function of position along the A/P body axis in msgn1MO morphants and wt siblings. (D) The mean (±s.d.) somite size in msgn1MO morphants and wt siblings. (E-I) Representative stained embryos of each genotype. The red dot in each case marks the thirtieth somite; black dots mark somites posterior to this.


As somites are being formed from the anterior region of the PSM, mesodermal progenitors have to constantly feed new cells into the posterior PSM. The numbers of progenitors and the rate at which they differentiate and move out from the tailbud to feed the PSM have to be tightly controlled, with termination of the process only when the correct species-specific number of somites is reached. With too fast a rate of exit, or too slow a proliferation of progenitors, the PSM would be prematurely extinguished and the body axis would be truncated. How is the balance between differentiation and progenitor maintenance achieved and how is this coordinated with cell movement? In this work, we propose that Msgn1, acting in a semi-redundant fashion with Spt, plays a crucial role in controlling these processes (Fig. 8).

Fig. 8.

Model of Msgn1 function. Progenitor cells in the tailbud are maintained by a positive-feedback loop between Wnt, ntl and Fgf genes. Wnt, Ntl and Fgf (or some combination of these factors) also activate the expression of msgn1, with a particular probability per progenitor cell per unit time (those that are fated to become PSM), driving cells out of the tailbud into the PSM. The presence of Msgn1 and Spt (Tbx16) in these emigrant cells stimulates their directed movement and also switches off expression of the Wnt/ntl/Fgf gene loop, allowing them to progress along the PSM differentiation pathway and activate tbx24. Msgn1 also represses snail1a to exert some or all of its effects on cell movement. The msgn1/spt-Wnt/ntl/Fgf negative-feedback loop might furthermore contribute to the homeostasis of the tailbud progenitor population: for example, an enlargement of the population of progenitor cells will tend to raise tailbud levels of Wnt and Fgf, which will increase the proportion of cells that switch on msgn1/spt and emigrate, bringing population size down again. PSM, presomitic mesoderm.

Msgn1 is required redundantly with Spt for tail formation in zebrafish

Loss of msgn1 function in zebrafish causes a mild phenotype that is reminiscent of that observed in the mouse. In the absence of msgn1, the characteristic feature of retention of ntl/Wnt-positive progenitor cells in the tailbud is observed, although somites continue to be formed. However, when we generated msgn1;spt double mutants and morphants the tailbud was hugely enlarged and both trunk and tail somites fail to form (Fig. 1D-D″). These results reveal that spt and msgn1 act redundantly in tail somite formation in zebrafish: either gene alone is sufficient to support the tail process. Although msgn1 has been shown to be a Spt target during gastrulation (Garnett et al., 2009), our results show that msgn1 cannot depend entirely on Spt for its activation but instead must act in parallel with Spt during tail formation.

Msgn1, like Spt, regulates the transition from the tailbud to the PSM by switching off the expression of progenitor genes

Previous work (Griffin and Kimelman, 2002) suggested that, for PSM progenitors to progress from the tailbud to the PSM, they must downregulate progenitor markers such as ntl and wnt8, and that Spt contributes to this regulation. To investigate whether Msgn1 is acting in a similar manner to Spt, we combined loss-of-function analysis with gain-of-function studies. We found that when msgn1 is overexpressed ectopically, the ntl/wnt8-expressing progenitors are severely reduced and the anterior PSM marker tbx24 is ectopically expressed in the tailbud (Fig. 2H,H′,J,J′,N). These results strongly suggest that Msgn1 is indeed acting like Spt (Griffin and Kimelman, 2002), inhibiting expression of the progenitor markers to allow cells to progress along the PSM differentiation pathway.

When we temporally controlled Msgn1 expression using our inducible msgn1 transgenic, we observed rapid and strong downregulation of ntl and wnt8 expression (Fig. 3A′,B′,C′), indicating that Msgn1 can rapidly inhibit the expression of these genes. Msgn1 does not have a readily identifiable repressor domain and is thought to be a transcriptional activator (Yabe and Takada, 2012), but it might exert repression via the rapid transcriptional activation of a repressor, or, for example, by dimerising with, and blocking the action of, some other bHLH family activator.

Use of the msgn1 transgenic line also allowed us to show, for the first time, that the inhibition of progenitor character is essential for progression to the next step, i.e. the activation of the intermediate PSM marker tbx24. In fact, we show that Msgn1 can only ectopically activate tbx24 in the tailbud (Fig. 3K′,L′) after a time delay that corresponds to the time required for the downregulation of ntl, Wnt and Fgf progenitor genes in the tailbud. This is further supported by the posterior expansion of tbx24 upon transient inhibition of Wnt signalling during segmentation (Fig. 4).

msgn1 and the ntl, Wnt and Fgf genes are coupled in a negative-feedback loop

During segmentation, Ntl, Wnt and Fgf positively regulate msgn1 expression (supplementary material Fig. S5) (Griffin and Kimelman, 2002; Goering et al., 2003; Wittler et al., 2007; Wang et al., 2007; Morley et al., 2009; Garnett et al., 2009), and we have shown that, in turn, Msgn1 represses ntl, Wnt and Fgf genes (Fig. 3), thereby establishing a negative-feedback loop.

How does this relate to the phenotypes that we see upon gain or loss of msgn1 function? Our data show that, in the absence of msgn1, progenitors are retained longer in the PZ and MZ, as shown by ntl and tbx6l double in situ hybridisation. Normally, msgn1 only starts to be expressed in the MZ and is not seen in the PZ, consistent with a role for Msgn1 in promoting the transition from the MZ to the PSM. But if Msgn1 is normally only expressed in the MZ and PSM, why does its loss cause an expansion of the PZ (Fig. 2L)? One possible explanation is based on the msgn1/ntl/Wnt/Fgf gene regulatory circuitry and the action of Wnt and/or Fgf as diffusible signals. Because Wnts can diffuse through the extracellular space, the increased expression of wnt8 in the MZ, when Msgn1 is lost, could induce an upregulation of ntl and wnt8 in the PZ, given that ntl and wnt8 positively regulate one another (Martin and Kimelman, 2008).

We suggest that this complex negative-feedback relationship between msgn1 and ntl/Wnt/Fgf governs the balance between the differentiation and maintenance of PSM progenitors.

Msgn1 regulates cell movement and axis elongation

Our time-lapse confocal microscopy analysis showed that in the absence of Msgn1 the ventral diving movement of tailbud cells is largely suppressed (Fig. 5H). To understand how Msgn1 controls cell movement during segmentation, we investigated whether Msgn1 could regulate Snail transcription factors, which are bona fide promoters of cell movement.

Indeed, we found that impaired Snail1a activity leads to deficient ventral diving (Fig. 6I). However, instead of activating snail1a, Msgn1 represses it (Fig. 6G). In fact, the endogenous expression pattern of snail1a seems to reflect this regulation, as snail1a is strongly expressed in the MZ and fades away in the PSM as msgn1 starts to be strongly expressed (Fig. 6A-A″). These results suggest that Snail1a is important to initiate ventral diving movements, which are reminiscent of the EMT-like process that occurs at the germ ring, but as cells progress in the PSM it has to be turned off to allow cells to reduce their motility.

This is consistent with the recent finding that Spt is essential to stop the transitional highly motile state that cells adopt as they involute at the germ ring (Row et al., 2011). In spt mutants, snail1a is also upregulated in the tailbud (Thisse et al., 1993), and, as we have shown here, Spt and Msgn1 share partially redundant functions, suggesting that both Msgn1 and Spt might repress snail1a to complete the EMT-like movement in the tailbud.

Our results also show that Msgn1, through repression of snail1a, contributes to axis extension: in the absence of msgn1 (expansion of snail1a) axis extension is reduced, whereas when snail1a is downregulated axis extension is increased. Why would stopping a motile state be important to promote axis elongation? A possible clue comes from recent work in the chick embryo that proposed that proper axis extension is dependent on a PSM cell motility gradient, i.e. effective A/P axis extension only occurs if the PSM cells reduce their motility as they become displaced anteriorly (Bénazéraf et al., 2010). Note that in zebrafish a similar gradient of cell motility has also been described in the PSM (Mara et al., 2007), reflecting the progressive epithelialisation of somite formation. In this scenario, following the ventral diving movement, efficient termination of Snail1a activity regulated by Msgn1/Spt could be required for the progressive reduction of PSM cell motility leading to efficient A/P axis extension in zebrafish.

Msgn1 regulates the number of somites by controlling the flux of cells out of the tailbud

According to the clock and wavefront model (reviewed by Dequéant and Pourquié, 2008), somite size should be proportional to the number of cells entering the PSM in each oscillation cycle of the segmentation clock, and the total number of somites should be equal to the total time for which production of PSM cells continues, divided by the length of that cycle. Our data fit these expectations, if we assume that the clock continues to tick at its normal rate in our mutants and morphants. Thus, for example, in the absence of Msgn1, where there is a reduced flux of cells from tailbud to PSM, somites are abnormally small (Fig. 7C,D). Moreover, retention of cells in the tailbud in msgn1–/– and msgn1–/–;spt+/– mutants delays exhaustion of the stock of progenitors and allows somitogenesis to continue for longer than normal, leading to an increase in the final number of somites (Fig. 7A,B). To our knowledge, this is the first report of mutants that have an increased somite number. Although the effect that we see is small, our data suggest that modulation of the rate of exit of cells from the tailbud zone might be a strategy used during evolution to create the different species-specific somite numbers observed across vertebrates.

In summary, Msgn1, together with Spt, plays a central role in the production of paraxial mesoderm, controlling both a switch of cell character and cell movement, thereby propelling the transition from tailbud into PSM and driving the subsequent program of PSM differentiation.


We thank Stephen Wilson, David Kimelman and Randall Moon for snail1a, ntl and wnt8 plasmids, respectively; Christian Tendeng for the pT2 vector; Ben Martin for the hsp70:ntl and hsp70:caβcatenin DNA constructs; the Yamaguchi, Feldman and Takada labs for sharing data prior to publication; Lara Carvalho, Fábio Valério, Jen St Hilaire, Deborah Weinman and Keely McDaniel for excellent fish care; José Rino and António Temudo for imaging advice; and Ana Margarida Cristovão and Pedro Henriques for technical support.


  • Funding

    This work was supported by a Fundação para a Ciência e a Tecnologia (FCT) grant [PTDC/SAU-OBD/101282/2008 to L.S.]; an FCT Fellowship [SFRH/BPD/28586/2006 to R.F.]; Cancer Research UK (J.L.); a National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) grant [GM061952] and ARRA supplement (S.L.A.) and March of Dimes grant [1-FY09-458] (S.L.A.). A.A.M. is funded by an NIH Research Supplement [NIH/NIGMS grant GM061952] to promote diversity in health-related research. The msgnfh273 TILLING allele was found with support from NIH grant R01 HG002995. Deposited in PMC for release after 12 months.

  • Competing interests statement

    The authors declare no competing financial interests.

  • Supplementary material

    Supplementary material available online at

  • Accepted September 13, 2012.


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