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RESEARCH ARTICLE
The RNA-binding protein DND1 acts sequentially as a negative regulator of pluripotency and a positive regulator of epigenetic modifiers required for germ cell reprogramming
Victor A. Ruthig, Matthew B. Friedersdorf, Jason A. Garness, Steve C. Munger, Corey Bunce, Jack D. Keene, Blanche Capel
Development 2019 146: dev175950 doi: 10.1242/dev.175950 Published 25 July 2019
Victor A. Ruthig
1Department of Cell Biology, Duke University Medical Center, Durham, NC 27710, USA
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Matthew B. Friedersdorf
2Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA
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Jason A. Garness
1Department of Cell Biology, Duke University Medical Center, Durham, NC 27710, USA
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Steve C. Munger
3The Jackson Laboratory, Bar Harbor, ME 04609, USA
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Corey Bunce
1Department of Cell Biology, Duke University Medical Center, Durham, NC 27710, USA
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Jack D. Keene
2Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA
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Blanche Capel
1Department of Cell Biology, Duke University Medical Center, Durham, NC 27710, USA
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  • For correspondence: blanche.capel@duke.edu
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ABSTRACT

The adult spermatogonial stem cell population arises from pluripotent primordial germ cells (PGCs) that enter the fetal testis around embryonic day (E)10.5. PGCs undergo rapid mitotic proliferation, then enter prolonged cell cycle arrest (G1/G0), during which they transition to pro-spermatogonia. In mice homozygous for the Ter mutation in the RNA-binding protein Dnd1 (Dnd1Ter/Ter), many male germ cells (MGCs) fail to enter G1/G0 and instead form teratomas: tumors containing many embryonic cell types. To investigate the origin of these tumors, we sequenced the MGC transcriptome in Dnd1Ter/Ter mutants at E12.5, E13.5 and E14.5, immediately prior to teratoma formation, and correlated this information with DO-RIP-Seq-identified DND1 direct targets. Consistent with previous results, we found DND1 controls downregulation of many genes associated with pluripotency and active cell cycle, including mTor, Hippo and Bmp/Nodal signaling pathway elements. However, DND1 targets also include genes associated with male differentiation, including a large group of chromatin regulators activated in wild-type but not mutant MGCs during the E13.5 and E14.5 transition. Results suggest multiple DND1 functions and link DND1 to initiation of epigenetic modifications in MGCs.

Footnotes

  • Competing interests

    The authors declare no competing or financial interests.

  • Author contributions

    Conceptualization: B.C.; Methodology: J.A.G., J.D.K.; Software: S.C.M., C.B., J.D.K.; Validation: J.A.G.; Formal analysis: V.A.R., M.B.F., J.A.G., S.C.M., C.B.; Investigation: M.B.F., J.A.G.; Data curation: V.A.R., M.B.F., S.C.M., C.B.; Writing - original draft: V.A.R., M.B.F., B.C.; Writing - review & editing: S.C.M., C.B., J.D.K.; Visualization: V.A.R.; Supervision: J.D.K., B.C.; Project administration: J.D.K., B.C.; Funding acquisition: J.D.K., B.C.

  • Funding

    This work was supported by the National Institutes of Health (GM087500 to B.C.); by Bridge Funding from Duke University Medical Center (to B.C.); and by the National Cancer Institute (CA157268 to J.D.K.). Deposited in PMC for release after 12 months.

  • Data availability

    The raw RNA-Seq and DO-RIP-seq datasets have been deposited in GEO as a single unified SuperSeries with accession number GSE132719.

  • Supplementary information

    Supplementary information available online at http://dev.biologists.org/lookup/doi/10.1242/dev.175950.supplemental

  • Received January 21, 2019.
  • Accepted June 20, 2019.
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Keywords

  • DO-RIP-Seq
  • Dnd1
  • Germ cells
  • RNAseq
  • Teratoma

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RESEARCH ARTICLE
The RNA-binding protein DND1 acts sequentially as a negative regulator of pluripotency and a positive regulator of epigenetic modifiers required for germ cell reprogramming
Victor A. Ruthig, Matthew B. Friedersdorf, Jason A. Garness, Steve C. Munger, Corey Bunce, Jack D. Keene, Blanche Capel
Development 2019 146: dev175950 doi: 10.1242/dev.175950 Published 25 July 2019
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RESEARCH ARTICLE
The RNA-binding protein DND1 acts sequentially as a negative regulator of pluripotency and a positive regulator of epigenetic modifiers required for germ cell reprogramming
Victor A. Ruthig, Matthew B. Friedersdorf, Jason A. Garness, Steve C. Munger, Corey Bunce, Jack D. Keene, Blanche Capel
Development 2019 146: dev175950 doi: 10.1242/dev.175950 Published 25 July 2019

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