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RESEARCH ARTICLE
HY5 and phytochrome activity modulate shoot-to-root coordination during thermomorphogenesis in Arabidopsis
Christophe Gaillochet, Yogev Burko, Matthieu Pierre Platre, Ling Zhang, Jan Simura, Björn C. Willige, S. Vinod Kumar, Karin Ljung, Joanne Chory, Wolfgang Busch
Development 2020 147: dev192625 doi: 10.1242/dev.192625 Published 15 December 2020
Christophe Gaillochet
1Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
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Yogev Burko
1Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
2Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, CA 92037, USA
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Matthieu Pierre Platre
1Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
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  • ORCID record for Matthieu Pierre Platre
Ling Zhang
1Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
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Jan Simura
3Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
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Björn C. Willige
1Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
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S. Vinod Kumar
4Department of Biosciences, College of Life and Environmental Sciences, Stocker Road, Exeter EX4 4QD, UK
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Karin Ljung
3Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
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Joanne Chory
1Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
2Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, CA 92037, USA
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Wolfgang Busch
1Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
5Integrative Biology Laboratory, Salk Institute for Biological Studies, 10010 N Torrey Pines Rd, La Jolla, CA 92037, USA
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  • For correspondence: wbusch@salk.edu

Handling Editor: Ykä Helariutta

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ABSTRACT

Temperature is one of the most impactful environmental factors to which plants adjust their growth and development. Although the regulation of temperature signaling has been extensively investigated for the aerial part of plants, much less is known and understood about how roots sense and modulate their growth in response to fluctuating temperatures. Here, we found that shoot and root growth responses to high ambient temperature are coordinated during early seedling development in Arabidopsis. A shoot signaling module that includes HY5, the phytochromes and the PIFs exerts a central function in coupling these growth responses and maintaining auxin levels in the root. In addition to the HY5/PIF-dependent shoot module, a regulatory axis composed of auxin biosynthesis and auxin perception factors controls root responses to high ambient temperature. Taken together, our findings show that shoot and root developmental responses to temperature are tightly coupled during thermomorphogenesis and suggest that roots integrate energy signals with local hormonal inputs.

Footnotes

  • Competing interests

    The authors declare no competing or financial interests.

  • Author contributions

    Conceptualization: C.G., W.B.; Methodology: C.G.; Formal analysis: L.Z.; Investigation: C.G., Y.B., M.P.P., J.S., K.L.; Resources: B.C.W., S.V.K., W.B.; Data curation: L.Z.; Writing - original draft: C.G., W.B.; Writing - review & editing: C.G., W.B.; Visualization: C.G., Y.B.; Supervision: K.L., J.C., W.B.; Project administration: W.B.; Funding acquisition: K.L., J.C., W.B.

  • Funding

    This study was funded by the National Institute of General Medical Sciences of the National Institutes of Health (grant number R01GM127759 to W.B.) and start-up funds from the Salk Institute for Biological Studies. J.C. is an investigator of the Howard Hughes Medical Institute. This study was supported by the HHS NIH National Institute of General Medical Sciences (grant 5R35GM122604-02_05 to J.C.), the Howard Hughes Medical Institute (to J.C.), the European Molecular Biology Organization (grant ALTF 785-2013 to Y.B.), the United States - Israel Binational Agricultural Research and Development Fund (grant FI-488-13 to Y.B.) and the Human Frontier Science Program (LT000222/2013-L to B.W). K.L. and J.S. acknowledge the Swedish research councils VINNOVA, Vetenskapsrådet (VR) and the Knut och Alice Wallenbergs Stiftelse (KAW). Deposited in PMC for release after 12 months.

  • Data availability

    Raw RNA-seq reads generated as part of this study are deposited at GEO under accession number GSE138133.

  • Supplementary information

    Supplementary information available online at https://dev.biologists.org/lookup/doi/10.1242/dev.192625.supplemental

  • Received May 11, 2020.
  • Accepted October 26, 2020.
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Keywords

  • Root development
  • Temperature
  • Thermomorphogenesis
  • Phytochromes
  • HY5
  • Arabidopsis

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RESEARCH ARTICLE
HY5 and phytochrome activity modulate shoot-to-root coordination during thermomorphogenesis in Arabidopsis
Christophe Gaillochet, Yogev Burko, Matthieu Pierre Platre, Ling Zhang, Jan Simura, Björn C. Willige, S. Vinod Kumar, Karin Ljung, Joanne Chory, Wolfgang Busch
Development 2020 147: dev192625 doi: 10.1242/dev.192625 Published 15 December 2020
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RESEARCH ARTICLE
HY5 and phytochrome activity modulate shoot-to-root coordination during thermomorphogenesis in Arabidopsis
Christophe Gaillochet, Yogev Burko, Matthieu Pierre Platre, Ling Zhang, Jan Simura, Björn C. Willige, S. Vinod Kumar, Karin Ljung, Joanne Chory, Wolfgang Busch
Development 2020 147: dev192625 doi: 10.1242/dev.192625 Published 15 December 2020

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