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Segmentation

  • RESEARCH ARTICLE
    The second pharyngeal pouch is generated by dynamic remodeling of endodermal epithelium in zebrafish
    Kazunori Okada, Shinji Takada
    Development 2020 147: dev194738 doi: 10.1242/dev.194738 Published 23 December 2020

    Summary: Live-imaging and cell-tracing experiments demonstrate that dynamic epithelial remodeling fuses the anterior and posterior pharyngeal pouches, which are generated independently, into a seamless array of pouches in zebrafish embryos.

  • TECHNIQUES AND RESOURCES
    EPySeg: a coding-free solution for automated segmentation of epithelia using deep learning
    Benoit Aigouy, Claudio Cortes, Shanda Liu, Benjamin Prud'Homme
    Development 2020 147: dev194589 doi: 10.1242/dev.194589 Published 23 December 2020

    Summary: EPySeg is easy-to-use open-source software that applies deep-learning technology for segmentation of membrane-labelled epithelial tissues, either locally or in the cloud.

  • RESEARCH ARTICLE
    Kctd15 regulates nephron segment development by repressing Tfap2a activity
    Brooke E. Chambers, Eleanor G. Clark, Allison E. Gatz, Rebecca A. Wingert
    Development 2020 147: dev191973 doi: 10.1242/dev.191973 Published 14 December 2020

    Summary: kctd15 paralogs regulate nephron segment commitment and differentiation through repressor-mediated genetic feedback with tfap2a. This fundamentally deepens our knowledge about the genetic control of kidney development.

  • REVIEW
    Arthropod segmentation
    Erik Clark, Andrew D. Peel, Michael Akam
    Development 2019 146: dev170480 doi: 10.1242/dev.170480 Published 25 September 2019

    Summary: This Review describes the regulation and evolution of segment patterning in arthropods, covering the experimental discoveries and conceptual advances of the past 15 years.

  • RESEARCH ARTICLE
    Shifting roles of Drosophila pair-rule gene orthologs: segmental expression and function in the milkweed bug Oncopeltus fasciatus
    Katie Reding, Mengyao Chen, Yong Lu, Alys M. Cheatle Jarvela, Leslie Pick
    Development 2019 146: dev181453 doi: 10.1242/dev.181453 Published 10 September 2019

    Summary: Despite the broad conservation of segmentation in insects, the regulatory genes underlying this process in Drosophila have different roles in the hemipteran Oncopeltus fasciatus.

  • RESEARCH ARTICLE
    Tfap2a is a novel gatekeeper of nephron differentiation during kidney development
    Brooke E. Chambers, Gary F. Gerlach, Eleanor G. Clark, Karen H. Chen, Anna E. Levesque, Ignaty Leshchiner, Wolfram Goessling, Rebecca A. Wingert
    Development 2019 146: dev172387 doi: 10.1242/dev.172387 Published 10 July 2019

    Summary: tfap2a functions in distal nephron development to control the progression of cells to a fully differentiated state. This fundamentally deepens our knowledge about the genetic control of kidney development.

  • TECHNIQUES AND RESOURCES
    Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish
    Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle Harrington, Jan Huisken
    Development 2019 146: dev173757 doi: 10.1242/dev.173757 Published 21 March 2019

    Summary: A novel dedicated multi-sample light sheet imaging, processing and analysis platform is presented, and its value in diverse quantitative long-term imaging studies, such as vascular growth in zebrafish, is demonstrated.

  • RESEARCH ARTICLE
    Evidence for the temporal regulation of insect segmentation by a conserved sequence of transcription factors
    Erik Clark, Andrew D. Peel
    Development 2018 145: dev155580 doi: 10.1242/dev.155580 Published 23 May 2018

    Highlighted Article: Caudal, Dichaete and Odd-paired are likely to regulate pair-rule gene expression similarly in Drosophila and Tribolium, providing a simple mechanism for the evolutionary transition between short-germ and long-germ segmentation modes.

  • RESEARCH ARTICLE
    Conservation and variation in pair-rule gene expression and function in the intermediate-germ beetle Dermestes maculatus
    Jie Xiang, Katie Reding, Alison Heffer, Leslie Pick
    Development 2017 144: 4625-4636; doi: 10.1242/dev.154039

    Summary: Expression and functional studies in hide beetles suggest independent roles for pair-rule genes in elongation and segmentation of sequentially segmenting insects, and rewiring of a subset of these regulatory genes.

  • RESEARCH ARTICLE
    Dynamics of growth zone patterning in the milkweed bug Oncopeltus fasciatus
    Tzach Auman, Barbara M. I. Vreede, Aryeh Weiss, Susan D. Hester, Terri A. Williams, Lisa M. Nagy, Ariel D. Chipman
    Development 2017 144: 1896-1905; doi: 10.1242/dev.142091

    Summary: A detailed analysis of posterior segment addition in an insect reveals that the growth zone is divided into two functional domains responsible for growth and differentiation.

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